Evidence map›Paper›PMID 34240175›Full record

ArticleThe Journal of infectious diseases2022

Deep Sequencing to Detect Diversity of Trypanosoma cruzi Infection in Patients Coinfected With Human Immunodeficiency Virus and Chagas Disease.

Natalie M Bowman, Sujata Balasubramanian, Robert H Gilman, Christian Parobek, Maritza Calderon, Andreea Waltmann, Louisa A Messenger, Leny Sanchez, Caryn Bern, Jonathan J Juliano and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
  2. ClinicalbioRxiv : the preprint server for biology · 2025
    Article
  3. Chagas disease in immunocompromised patients.Clinical microbiology reviews · 2024
    Review
  4. Review
  5. Article
  6. Review
  7. Chagas Disease in People with HIV: A Narrative Review.Tropical medicine and infectious disease · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Natalie M BowmanDivision of Infectious Diseases, Department of Medicine, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, North Carolina, USA.ORCID 0000-0003-4260-8009
Sujata BalasubramanianUniversity of North Carolina at Chapel Hill School of Medicine, Chapel Hill, North Carolina, USA.
Robert H GilmanDepartment of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Christian ParobekUniversity of North Carolina at Chapel Hill School of Medicine, Chapel Hill, North Carolina, USA.
Maritza CalderonUniversidad Peruana Cayetano Heredia, Lima, Peru.
Andreea WaltmannInstitute of Global Health and Infectious Diseases, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Louisa A MessengerDepartment of Disease Control, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Leny SanchezUniversidad Peruana Cayetano Heredia, Lima, Peru.
Caryn BernDepartment of Epidemiology and Biostatistics, University of California, San Francisco School of Medicine, San Francisco, California, USA.
Jonathan J JulianoDivision of Infectious Diseases, Department of Medicine, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, North Carolina, USA.ORCID 0000-0002-0591-0850
Working Group on Chagas Disease in Bolivia and Peru
University of North Carolina at Chapel Hill · USUniversidad Peruana Cayetano Heredia · PEJohns Hopkins University · USLondon School of Hygiene & Tropical Medicine · GBUniversity of California, San Francisco · US

Funding

Virology, Immunology, and Microbiology CoreP30AI050410 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2001 to 2026
$76.9M
Fogarty Global Health Fellows Coordinating CenterR25TW009340 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CHI, BENJAMIN H. · 2012 to 2016
$6.9M
Infectious Diseases Training program in Bolivia: South-South Training with PeruD43TW010074 · FIC · JOHNS HOPKINS UNIVERSITY · PI ROBERT H GILMAN, Jeffrey Tornheim · 2015 to 2026
$3.5M
Novel nanoparticular diagnostics for cerebral toxoplasmosis and Chagas in HIV patients living in Latin AmericaR01AI136722 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GILMAN, ROBERT H · 2018 to 2022
$3.3M
Mentoring in Translational Malaria GenomicsK24AI134990 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jonathan J Juliano · 2018 to 2026
$1.6M
The pathogenesis of T. cruzi in HIV-infected persons in BoliviaK23AI113197 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOWMAN, NATALIE MCCARTER · 2014 to 2018
$878k
FIC NIH HHS D43 TW010074FIC NIH HHS R25 TW009340NIAID NIH HHS K23 AI113197NIAID NIH HHS K24 AI134990NIAID NIH HHS P30 AI050410NIAID NIH HHS R01 AI136722
6 · The paper itself

Abstract

Chagas disease, caused by Trypanosoma cruzi, can reactivate and cause severe acute disease in immunocompromised patients such as those infected with human immunodeficiency virus (HIV). We conducted amplicon deep sequencing of a 327-bp fragment of the tcscd5 gene using an Ion Torrent PGM directly from clinical samples from HIV patients with high parasitemia. We describe the within-host diversity, both characterizing the discrete typing unit of the infections and confirming the presence of multistrain infections, directly from clinical samples. This method can rapidly provide information on the genetic diversity of T. cruzi infection, which can have direct impacts on clinical disease.

Indexed as

Chagas DiseaseCoinfectionGenetic VariationHigh-Throughput Nucleotide SequencingHIVHIV InfectionsHumansReal-Time Polymerase Chain ReactionTrypanosoma cruziamplicon deep sequencingChagas diseasediscrete typing unitgenetic diversityHIVmulticlonalitytcsc5dTrypanosoma cruzi

Identifiers

PMID34240175
PMCPMC8764271
OpenAlexW3182996389

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.