ArticleCommunications biology2021
A reference-grade genome identifies salt-tolerance genes from the salt-secreting mangrove species Avicennia marina.
Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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28 citing papers in PubMed, 70 citations in OpenAlex.
- Chromosome-level genome assemblies of Brownlowia tersa and Brownlowia argentata (Brownlowioideae: Malvaceae).Scientific data · 2026Article
- Research Progress on the Regulatory Mechanisms of Salt-Stress Response and Functional Genes inCurrent issues in molecular biology · 2026Review
- Genome-wide identification and expression analysis of the Glutathione S-transferase (GST) gene family in Avicennia marina under salt and auxin stress.BMC plant biology · 2026Article
- Genome Assembly of Three Shrub Mangroves in the Genus Acanthus Reveals Two Polyploidy Events and Expansion of Genes Linked to Root Adaptation in Coastal Habitats.GigaScience · 2026Article
- Genome-Wide Discovery and Characterization of the Auxin Response Factor (ARF) Gene Family inBiology · 2025Article
- Genomics-assisted breeding for designing salinity-smart future crops.Plant biotechnology journal · 2025Review
- De-novo assembly and comparative analysis of the complete mitogenome of traditional Chinese medicine Strobilanthes sarcorrhiza.BMC plant biology · 2025Article
- Genome compaction underlies the molecular adaptation of bay cedar (Plant diversity · 2025Article
- Assembly of the salt-secreting mangrove Avicennia rumphiana.PloS one · 2025Article
- A Trade-Off Between Leaf Carbon Economics and Plant Size Among Mangrove Species in Dongzhaigang, China.Ecology and evolution · 2024Article
- SOS1 gene family in mangrove (Kandelia obovata): Genome-wide identification, characterization, and expression analyses under salt and copper stress.BMC plant biology · 2024Article
- Identification and analysis of short-term and long-term salt-associated lncRNAs in the leaf of Avicennia marina.BMC plant biology · 2024Article
- Genome-wide identification and functional profile analysis of long non-coding RNAs in Avicennia marina.The plant genome · 2024Article
- From swamp to field: how genes from mangroves and its associates can enhance crop salinity tolerance.Molecular biology reports · 2024Review
- Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment.Nature plants · 2024Article
- Chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- Ajay Kumar Parida (1963-2022), an eminent plant biotechnologist with a passion for mangrove biology.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- CircRNAs regulate the crosstalk between inflammation and tumorigenesis: The bilateral association and molecular mechanisms.Molecular therapy : the journal of the American Society of Gene Therapy · 2023Review
- Genome wide identification and characterization of MATE family genes in mangrove plants.Genetica · 2023Article
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Authors and funding
11 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Water scarcity and salinity are major challenges facing agriculture today, which can be addressed by engineering plants to grow in the boundless seawater. Understanding the mangrove plants at the molecular level will be necessary for developing such highly salt-tolerant agricultural crops. With this objective, we sequenced the genome of a salt-secreting and extraordinarily salt-tolerant mangrove species, Avicennia marina, that grows optimally in 75% seawater and tolerates >250% seawater. Our reference-grade ~457 Mb genome contains 31 scaffolds corresponding to its chromosomes. We identified 31,477 protein-coding genes and a salinome consisting of 3246 salinity-responsive genes and homologs of 614 experimentally validated salinity tolerance genes. The salinome provides a strong foundation to understand the molecular mechanisms of salinity tolerance in plants and breeding crops suitable for seawater farming.
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