Evidence map›Paper›PMID 34236875›Full record

ArticleJournal of proteome research2021

Integrated Multi-Omics Analysis of Mechanisms Underlying Yeast Ethanol Tolerance.

Nikolina Šoštarić, Ahmed Arslan, Bernardo Carvalho, Marcin Plech, Karin Voordeckers, Kevin J Verstrepen, Vera van Noort

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. The Alleviating Effect of Arginine on Ethanol Stress inJournal of fungi (Basel, Switzerland) · 2025
    Article
  3. Review
  4. Review
  5. Indian journal of microbiology · 2023
    Article
  6. Article
  7. Integrative Analysis of the Ethanol Tolerance ofInternational journal of molecular sciences · 2023
    Article
  8. Article
  9. Review
  10. Microbial Adaptation to Enhance Stress Tolerance.Frontiers in microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Nikolina ŠoštarićCentre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 22, B-3001 Leuven, Belgium.
Ahmed ArslanCentre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 22, B-3001 Leuven, Belgium.
Bernardo CarvalhoCentre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 22, B-3001 Leuven, Belgium.
Marcin PlechCentre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 22, B-3001 Leuven, Belgium.
Karin VoordeckersCentre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 22, B-3001 Leuven, Belgium.
Kevin J VerstrepenCentre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 22, B-3001 Leuven, Belgium.
Vera van NoortCentre of Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 22, B-3001 Leuven, Belgium.
KU Leuven · BEVIB-KU Leuven Center for Microbiology · BELeiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For yeast cells, tolerance to high levels of ethanol is vital both in their natural environment and in industrially relevant conditions. We recently genotyped experimentally evolved yeast strains adapted to high levels of ethanol and identified mutations linked to ethanol tolerance. In this study, by integrating genomic sequencing data with quantitative proteomics profiles from six evolved strains (data set identifier PXD006631) and construction of protein interaction networks, we elucidate exactly how the genotype and phenotype are related at the molecular level. Our multi-omics approach points to the rewiring of numerous metabolic pathways affected by genomic and proteomic level changes, from energy-producing and lipid pathways to differential regulation of transposons and proteins involved in cell cycle progression. One of the key differences is found in the energy-producing metabolism, where the ancestral yeast strain responds to ethanol by switching to respiration and employing the mitochondrial electron transport chain. In contrast, the ethanol-adapted strains appear to have returned back to energy production mainly via glycolysis and ethanol fermentation, as supported by genomic and proteomic level changes. This work is relevant for synthetic biology where systems need to function under stressful conditions, as well as for industry and in cancer biology, where it is important to understand how the genotype relates to the phenotype.

Indexed as

ProteomicsSaccharomyces cerevisiaeEthanolFermentationGenomicsEthanolethanol tolerancegenomicsinteractomicsphenotypequantitative proteomicssignalingyeast

Identifiers

PMID34236875
PMCPMC8353626
OpenAlexW3178698322

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.