Evidence map›Paper›PMID 34235665›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Identification and Characterization of Mycobacterial Species Using Whole-Genome Sequences.

Marco A Riojas, Andrew M Frank, Samuel R Greenfield, Stephen P King, Conor J Meehan, Michael Strong, Alice R Wattam, Manzour Hernando Hazbón

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marco A RiojasATCC, BEI Resources, Manassas, VA, USA. mriojas@atcc.org.
Andrew M FrankATCC, Manassas, VA, USA.
Samuel R GreenfieldATCC, Manassas, VA, USA.
Stephen P KingATCC, Manassas, VA, USA.
Conor J MeehanUniversity of Bradford, Bradford, UK.
Michael StrongDepartment of Medicine, National Jewish Health, Denver, CO, USA.
Alice R WattamUniversity of Virginia, Charlottesville, VA, USA.
Manzour Hernando HazbónATCC, BEI Resources, Manassas, VA, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole-genome sequencing (WGS) has shown immense value in enabling identification and characterization of bacterial taxa. This is particularly true for mycobacteria, where culture-based characterization becomes delayed by the inherently slow growth rate of these organisms. This chapter reviews the general techniques behind WGS and their optimization, existing techniques for species-level identification and the advantages of WGS for this purpose, and a variety of useful tools for the genomic characterization of mycobacterial strains.

Indexed as

Genome, BacterialDNA, BacterialGenomicsHumansMicrobial Sensitivity TestsMycobacterium tuberculosisSequence Analysis, DNAWhole Genome SequencingDNA, BacterialANIdDDHDNAMycobacteriaSequencingSpecies identificationWhole-genome sequence

Identifiers

PMID34235665

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.