Evidence map›Paper›PMID 34235541›Full record

ArticleThe Plant cell2021

Structural and biochemical analyses of concanavalin A circular permutation by jack bean asparaginyl endopeptidase.

Samuel G Nonis, Joel Haywood, Jason W Schmidberger, Emily R R Mackie, Tatiana P Soares da Costa, Charles S Bond, Joshua S Mylne

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Systematic discovery of circular permutations across the protein universe using CIRPIN.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  10. Structural Analysis and Characterization of an Antiproliferative Lectin fromInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Samuel G NonisSchool of Molecular Sciences, The University of Western Australia, Crawley, Perth 6009, Australia.ORCID 0000-0002-7055-7053
Joel HaywoodSchool of Molecular Sciences, The University of Western Australia, Crawley, Perth 6009, Australia.ORCID 0000-0003-1576-9704
Jason W SchmidbergerSchool of Molecular Sciences, The University of Western Australia, Crawley, Perth 6009, Australia.ORCID 0000-0002-0919-0926
Emily R R MackieDepartment of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Victoria 3086, Australia.ORCID 0000-0002-0851-5741
Tatiana P Soares da CostaDepartment of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Victoria 3086, Australia.
Charles S BondSchool of Molecular Sciences, The University of Western Australia, Crawley, Perth 6009, Australia.ORCID 0000-0002-9584-6783
Joshua S MylneSchool of Molecular Sciences, The University of Western Australia, Crawley, Perth 6009, Australia.ORCID 0000-0003-4957-6388
The University of Western Australia · AULa Trobe University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over 30 years ago, an intriguing posttranslational modification was found responsible for creating concanavalin A (conA), a carbohydrate-binding protein from jack bean (Canavalia ensiformis) seeds and a common carbohydrate chromatography reagent. ConA biosynthesis involves what was then an unprecedented rearrangement in amino-acid sequence, whereby the N-terminal half of the gene-encoded conA precursor (pro-conA) is swapped to become the C-terminal half of conA. Asparaginyl endopeptidase (AEP) was shown to be involved, but its mechanism was not fully elucidated. To understand the structural basis and consequences of circular permutation, we generated recombinant jack bean pro-conA plus jack bean AEP (CeAEP1) and solved crystal structures for each to 2.1 and 2.7 Å, respectively. By reconstituting conA biosynthesis in vitro, we prove CeAEP1 alone can perform both cleavage and cleavage-coupled transpeptidation to form conA. CeAEP1 structural analysis reveals how it is capable of carrying out both reactions. Biophysical assays illustrated that pro-conA is less stable than conA. This observation was explained by fewer intermolecular interactions between subunits in the pro-conA crystal structure and consistent with a difference in the prevalence for tetramerization in solution. These findings elucidate the consequences of circular permutation in the only posttranslation example known to occur in nature.

Indexed as

Asparaginyl EndopeptidaseBinding SitesCanavaliaCatalytic DomainCircular DichroismConcanavalin ACrystallography, X-RayCysteine EndopeptidasesHydrogen-Ion ConcentrationMethylmannosidesModels, MolecularProtein ConformationProtein PrecursorsProtein StabilityRecombinant ProteinsSolutionsAsparaginyl EndopeptidaseConcanavalin ACysteine EndopeptidasesmethylmannosideMethylmannosidespro-concanavalin AProtein PrecursorsRecombinant ProteinsSolutions

Identifiers

PMID34235541
PMCPMC8408470
OpenAlexW3162828144

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.