Evidence map›Paper›PMID 34235229›Full record

ArticleStructural dynamics (Melville, N.Y.)2021

Dependence of phase transition uniformity on crystal sizes characterized using birefringence.

Saminathan Ramakrishnan, Jason R Stagno, Valentin Magidson, William F Heinz, Yun-Xing Wang

Abstract read
In one paragraph

Article in Structural dynamics (Melville, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Saminathan RamakrishnanStructural Biophysics Laboratory, Centre for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, USA.
Jason R StagnoStructural Biophysics Laboratory, Centre for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, USA.ORCID https://orcid.org/0000-0002-6464-7829
Valentin MagidsonOptical Microscopy and Analysis Laboratory, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA.ORCID https://orcid.org/0000-0002-0780-9123
William F HeinzOptical Microscopy and Analysis Laboratory, Cancer Research Technology Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, USA.ORCID https://orcid.org/0000-0002-6194-0536
Yun-Xing WangStructural Biophysics Laboratory, Centre for Cancer Research, National Cancer Institute, Frederick, Maryland 21702, USA.ORCID https://orcid.org/0000-0002-2175-0148

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI PENDLETON, RICHARD · 2019 to 2025
$3932.6M
Search for the Structural Basis of Biomacromolecular Function and ActivityZIABC010379 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WANG, YUN XING M · 2009 to 2025
$30.4M
NCI X-ray free electron laser (XFEL) initiativeZIABC011669 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WANG, YUN XING M · 2015 to 2024
$5.0M
NCI NIH HHS 75N91019D00024
6 · The paper itself

Abstract

Solid-solid phase transitions (SSPTs) have been widely observed in crystals of organic or inorganic small-molecules. Although SSPTs in macromolecular crystals have been reported, the majority involve local atomic changes, such as those induced by changes in hydration. SSPTs driven by large conformational changes, however, can be more difficult to characterize since they often significantly disrupt lattice packing interactions. Such drastic changes make the cooperativity of molecular motion at the atomic level less easily achieved and more dependent on intrinsic properties of the crystal that define lattice order. Here, we investigate the effect of crystal size on the uniformity of SSPT in thin plate-like crystals of the adenine riboswitch aptamer RNA (riboA) by monitoring changes in crystal birefringence upon the diffusion of adenine ligand. The birefringence intensity is directly related to molecular order and the concurrent changes to polarizability of molecules that results from structural changes throughout the phase transition. The riboA crystals were loosely grouped into three categories (small, medium, and large) based on the surface area of the crystal plates. The time width of transition increased as a function of crystal size, ranging from ∼13 s for small crystals to ∼40 s for the largest crystal. Whereas the transitions in small crystals (<10

Identifiers

PMID34235229
PMCPMC8248999

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.