Evidence map›Paper›PMID 34234122›Full record

ArticleNature communications2021

Whole-genome profiling of nasopharyngeal carcinoma reveals viral-host co-operation in inflammatory NF-κB activation and immune escape.

Jeff P Bruce, Ka-Fai To, Vivian W Y Lui, Grace T Y Chung, Yuk-Yu Chan, Chi Man Tsang, Kevin Y Yip, Brigette B Y Ma, John K S Woo, Edwin P Hui and 22 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 116 citations in OpenAlex.

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25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 6 institutions in 5 countries.

Jeff P Bruce *Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Ka-Fai To *Department of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0003-4919-3707
Vivian W Y Lui *School of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0001-6918-1573
Grace T Y Chung *Department of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Yuk-Yu ChanDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Chi Man TsangDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Kevin Y YipDepartment of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0001-5516-9944
Brigette B Y MaState Key Laboratory of Translational Oncology, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0003-4802-1102
John K S WooDepartment of Otorhinolaryngology, Head and Neck Surgery, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong SAR, China.
Edwin P HuiState Key Laboratory of Translational Oncology, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-8134-7019
Michael K F MakDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Sau-Dan LeeDepartment of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China.
Chit ChowDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-2364-8331
Sharmila VelapasamyDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Yvonne Y Y OrDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Pui Kei SiuDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Samah El GhamrasniPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID http://orcid.org/0000-0003-4346-1360
Stephenie ProkopecPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.ORCID http://orcid.org/0000-0001-7936-8577
Man WuDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Johnny S H KwanDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Yuchen LiuSchool of Biomedical Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-7647-6481
Jason Y K ChanDepartment of Otorhinolaryngology, Head and Neck Surgery, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-9480-4637
C Andrew van HasseltDepartment of Otorhinolaryngology, Head and Neck Surgery, Prince of Wales Hospital, The Chinese University of Hong Kong, Hong Kong SAR, China.
Lawrence S YoungWarwick Medical School, University of Warwick, Coventry, UK.ORCID http://orcid.org/0000-0003-3919-4298
Christopher W DawsonWarwick Medical School, University of Warwick, Coventry, UK.
Ian C PatersonDepartment of Oral & Craniofacial Sciences and Oral Cancer Research and Coordinating Centre, University of Malaya, Kuala Lumpur, Malaysia.ORCID http://orcid.org/0000-0001-9156-401X
Lee-Fah YapDepartment of Oral & Craniofacial Sciences and Oral Cancer Research and Coordinating Centre, University of Malaya, Kuala Lumpur, Malaysia.ORCID http://orcid.org/0000-0002-6815-3607
Sai-Wah TsaoSchool of Biomedical Sciences, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong SAR, China.
Fei-Fei LiuPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada.
Anthony T C ChanDepartment of Computer Science and Engineering, The Chinese University of Hong Kong, Hong Kong SAR, China.
Trevor J PughPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada. trevor.pugh@utoronto.ca.ORCID http://orcid.org/0000-0002-8073-5888
Kwok-Wai LoDepartment of Anatomical and cellular Pathology, The Chinese University of Hong Kong, Hong Kong SAR, China. kwlo@cuhk.edu.hk.ORCID http://orcid.org/0000-0002-3488-6124
Chinese University of Hong Kong · HKUniversity Health Network · CAUniversity of Malaya · MYUniversity of Warwick · GBOntario Institute for Cancer Research · CAUniversity of Hong Kong · HK

Funding

Medical Research Council MR/P013201
6 · The paper itself

Abstract

Interplay between EBV infection and acquired genetic alterations during nasopharyngeal carcinoma (NPC) development remains vague. Here we report a comprehensive genomic analysis of 70 NPCs, combining whole-genome sequencing (WGS) of microdissected tumor cells with EBV oncogene expression to reveal multiple aspects of cellular-viral co-operation in tumorigenesis. Genomic aberrations along with EBV-encoded LMP1 expression underpin constitutive NF-κB activation in 90% of NPCs. A similar spectrum of somatic aberrations and viral gene expression undermine innate immunity in 79% of cases and adaptive immunity in 47% of cases; mechanisms by which NPC may evade immune surveillance despite its pro-inflammatory phenotype. Additionally, genomic changes impairing TGFBR2 promote oncogenesis and stabilize EBV infection in tumor cells. Fine-mapping of CDKN2A/CDKN2B deletion breakpoints reveals homozygous MTAP deletions in 32-34% of NPCs that confer marked sensitivity to MAT2A inhibition. Our work concludes that NPC is a homogeneously NF-κB-driven and immune-protected, yet potentially druggable, cancer.

Indexed as

AnimalsAntineoplastic AgentsCarcinogenesisCell Line, TumorCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16Epstein-Barr Virus InfectionsFemaleGene Expression Regulation, ViralHerpesvirus 4, HumanHost-Pathogen InteractionsHumansMethionine AdenosyltransferaseMiceNasopharyngeal CarcinomaNasopharyngeal NeoplasmsAntineoplastic AgentsCDKN2A protein, humanCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16MAT2A protein, humanMethionine AdenosyltransferaseNF-kappa BReceptor, Transforming Growth Factor-beta Type IITGFBR2 protein, human

Identifiers

PMID34234122
PMCPMC8263564
OpenAlexW3179029996

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.