ArticleBMC genomics2021
The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis.
Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed.
- Genome-Wide Identification of thePlants (Basel, Switzerland) · 2026Article
- Genome-Wide Association Study Reveals Genetic Loci, Candidate Genes and Favorable Haplotypes for Important Agronomic Traits inJournal of fungi (Basel, Switzerland) · 2026Article
- Genetic mapping of novel QTL for seed protein stability in food-grade soybean (Glycine max).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Article
- Genome-wide identification and comparative analysis ofFrontiers in plant science · 2025Article
- Identification and expression analysis of CCCH gene family and screening of key low temperature stress response gene CbuC3H24 and CbuC3H58 in Catalpa bungei.BMC genomics · 2024Article
- Identification of QTL for kernel weight and size and analysis of the pentatricopeptide repeat (PPR) gene family in cultivated peanut (Arachis hypogaea L.).BMC genomics · 2023Article
- Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2023Article
- Genomic Identification of CCCH-Type Zinc Finger Protein Genes Reveals the Role ofInternational journal of molecular sciences · 2023Article
- Genome-wide analysis and identification of stress-responsive genes of the CCCH zinc finger family inFrontiers in plant science · 2023Article
- Comparative Transcriptome Analysis of CCCH Family in Roles of Flower Opening and Abiotic Stress inInternational journal of molecular sciences · 2022Article
- CCCH Zinc finger genes in Barley: genome-wide identification, evolution, expression and haplotype analysis.BMC plant biology · 2022Article
- Population Genomics and Haplotype Analysis in Bread Wheat Identify a Gene Regulating Glume Pubescence.Frontiers in plant science · 2022Article
- The C3H gene PtZFP2-like in Pinellia ternata acts as a positive regulator of the resistance to soft rot caused by Pectobacterium carotovorum.Physiologia plantarumArticle
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2 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundThe CCCH zinc finger (zf_CCCH) is a unique subfamily featured one or more zinc finger motif(s) comprising of three Cys and one His residues. The zf_CCCH family have been reported involving in various processes of plant development and adaptation.
resultsIn this study, the zf_CCCH genes were identified via a genome-wide search and were systematically analyzed. 116 Gmzf_CCCHs were obtained and classified into seventeen subfamilies. Gene duplication and expansion analysis showed that tandem and segmental duplications contributed to the expansion of the Gmzf_CCCH gene family, and that segmental duplication play the main role. The expression patterns of Gmzf_CCCH genes were tissue-specific. Eleven domesticated genes were detected involved in the regulation of seed oil and protein synthesis as well as growth and development of soybean through GWAS and haplotype analysis for Gmzf_CCCH genes among the 164 of 302 soybeans resequencing data. Among which, 8 genes play an important role in the synthesis of seed oil or fatty acid, and the frequency of their elite haplotypes changes significantly among wild, landrace and improved cultivars, indicating that they have been strongly selected in the process of soybean domestication.
conclusionsThis study provides a scientific foundation for the comprehensive understanding, future cloning and functional studies of Gmzf_CCCH genes in soybean, meanwhile, it was also helpful for the improvement of soybean with high oil content.
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