Evidence map›Paper›PMID 34233597›Full record

ArticleBioengineered2021

Screening of key biomarkers and immune infiltration in Pulmonary Arterial Hypertension via integrated bioinformatics analysis.

Yu Zeng, Nanhong Li, Zhenzhen Zheng, Riken Chen, Wang Liu, Junfen Cheng, Jinru Zhu, Mingqing Zeng, Min Peng, Cheng Hong

Open access · goldAbstract read
In one paragraph

Article in Bioengineered, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yu ZengDepartment of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.ORCID 0000-0003-0970-9537
Nanhong LiInstitute of Nephrology, Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Zhenzhen ZhengDepartment of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Riken ChenChina State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China.
Wang LiuDepartment of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Junfen ChengDepartment of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Jinru ZhuDepartment of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Mingqing ZengFirst Clinical School of Medicine, Guangdong Medical University, Zhanjiang, Guangdong, China.
Min PengDepartment of Respiration, The Second Affiliated Hospital of Guangdong Medical University, Zhanjiang, Guangdong, China.
Cheng HongChina State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China.ORCID 0000-0002-0710-8757
Guangdong Medical College · CNFirst Affiliated Hospital of Guangzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aimed to screen key biomarkers and investigate immune infiltration in pulmonary arterial hypertension (PAH) based on integrated bioinformatics analysis. The Gene Expression Omnibus (GEO) database was used to download three mRNA expression profiles comprising 91 PAH lung specimens and 49 normal lung specimens. Three mRNA expression datasets were combined, and differentially expressed genes (DEGs) were obtained. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses and the protein-protein interaction (PPI) network of DEGs were performed using the STRING and DAVID databases, respectively. The diagnostic value of hub gene expression in PAH was also analyzed. Finally, the infiltration of immune cells in PAH was analyzed using the CIBERSORT algorithm. Total 182 DEGs (117 upregulated and 65 downregulated) were identified, and 15 hub genes were screened. These 15 hub genes were significantly associated with immune system functions such as myeloid leukocyte migration, neutrophil migration, cell chemotaxis, Toll-like receptor signaling pathway, and NF-κB signaling pathway. A 7-gene-based model was constructed and had a better diagnostic value in identifying PAH tissues compared with normal controls. The immune infiltration profiles of the PAH and normal control samples were significantly different. High proportions of resting NK cells, activated mast cells, monocytes, and neutrophils were found in PAH samples, while high proportions of resting T cells CD4 memory and Macrophages M1 cell were found in normal control samples. Functional enrichment of DEGs and immune infiltration analysis between PAH and normal control samples might help to understand the pathogenesis of PAH.

Indexed as

Computational BiologyBiomarkersCase-Control StudiesDatabases, GeneticGene Expression ProfilingGene OntologyGene Regulatory NetworksHumansModels, BiologicalProtein Interaction MapsPulmonary Arterial HypertensionRegression AnalysisROC CurveBiomarkersBioinformatics analysisdifferentially expressed genes (degs)immune infiltrationimmune system functionpulmonary arterial hypertension (pah)

Identifiers

PMID34233597
PMCPMC8806790
OpenAlexW3178033312

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.