Evidence map›Paper›PMID 34232996›Full record

ArticleNucleic acids research2021

Single molecule analysis indicates stimulation of MUTYH by UV-DDB through enzyme turnover.

Sunbok Jang, Matthew A Schaich, Cindy Khuu, Brittani L Schnable, Chandrima Majumdar, Simon C Watkins, Sheila S David, Bennett Van Houten

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Sunbok JangUPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Matthew A SchaichUPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Cindy KhuuDepartment of Chemistry and Biochemistry, Molecular, Cell and Development Graduate Group, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.
Brittani L SchnableUPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Chandrima MajumdarDepartment of Chemistry and Biochemistry, Molecular, Cell and Development Graduate Group, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.
Simon C WatkinsUPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Sheila S DavidDepartment of Chemistry and Biochemistry, Molecular, Cell and Development Graduate Group, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.
Bennett Van HoutenUPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA 15213, USA.ORCID 0000-0002-4009-2478
University of Pittsburgh · USUniversity of California, Davis · USUPMC Hillman Cancer Center · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOHN C. BYRD · 1988 to 2026
$158.0M
ENVIRONMENTAL TOXICOLOGYT32ES007059 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura S Van Winkle · 1985 to 2026
$7.9M
Watching cooperative interactions between base and nucleotide excision repair proteinsR35ES031638 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Bennett Van Houten · 2020 to 2026
$6.2M
RECOGNITION AND REPAIR OF MISMATCHED DNA BY MUTYR01CA067985 · NCI · UNIVERSITY OF UTAH · PI DAVID, SHEILA SUE · 2000 to 2025
$5.6M
DNA damage recognition by nucleotide excision repair proteinsR01ES019566 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VAN HOUTEN, BENNETT · 2011 to 2020
$3.9M
Training in the Molecular Biophysics and Structural BiologyT32GM088119 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HINCK, ANDREW P · 2011 to 2020
$1.6M
Damage Sensor role of UV-DDB during base excision repairR01ES028686 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VAN HOUTEN, BENNETT · 2018 to 2019
$729k
NCI NIH HHS P30 CA047904NCI NIH HHS R01 CA067985NIEHS NIH HHS R01 ES019566NIEHS NIH HHS R01 ES028686NIEHS NIH HHS R35 ES031638NIEHS NIH HHS T32 ES007059NIGMS NIH HHS T32 GM088119
6 · The paper itself

Abstract

The oxidative base damage, 8-oxo-7,8-dihydroguanine (8-oxoG) is a highly mutagenic lesion because replicative DNA polymerases insert adenine (A) opposite 8-oxoG. In mammalian cells, the removal of A incorporated across from 8-oxoG is mediated by the glycosylase MUTYH during base excision repair (BER). After A excision, MUTYH binds avidly to the abasic site and is thus product inhibited. We have previously reported that UV-DDB plays a non-canonical role in BER during the removal of 8-oxoG by 8-oxoG glycosylase, OGG1 and presented preliminary data that UV-DDB can also increase MUTYH activity. In this present study we examine the mechanism of how UV-DDB stimulates MUTYH. Bulk kinetic assays show that UV-DDB can stimulate the turnover rate of MUTYH excision of A across from 8-oxoG by 4-5-fold. Electrophoretic mobility shift assays and atomic force microscopy suggest transient complex formation between MUTYH and UV-DDB, which displaces MUTYH from abasic sites. Using single molecule fluorescence analysis of MUTYH bound to abasic sites, we show that UV-DDB interacts directly with MUTYH and increases the mobility and dissociation rate of MUTYH. UV-DDB decreases MUTYH half-life on abasic sites in DNA from 8800 to 590 seconds. Together these data suggest that UV-DDB facilitates productive turnover of MUTYH at abasic sites during 8-oxoG:A repair.

Indexed as

AdenineAnimalsDNA DamageDNA GlycosylasesDNA RepairDNA ReplicationGuanineHydrocarbons, ChlorinatedMiceOxidative StressSingle Molecule Imaging7,8-dihydro-8-oxoguanine8-hydroxyguanineAdenineDDBDNA GlycosylasesGuanineHydrocarbons, ChlorinatedmutY adenine glycosylase

Identifiers

PMID34232996
PMCPMC8373069
OpenAlexW3182862526

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.