Evidence map›Paper›PMID 34232966›Full record

ArticlePloS one2021

Genome analysis of cotton leafroll dwarf virus reveals variability in the silencing suppressor protein, genotypes and genomic recombinants in the USA.

Afsha Tabassum, Sudeep Bag, Nelson D Suassuna, Kassie N Conner, Peng Chee, Robert C Kemerait, Phillip Roberts

Open access · goldAbstract read
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Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Afsha TabassumDepartment of Plant Pathology, University of Georgia, Tifton, Georgia, United States of America.
Sudeep BagDepartment of Plant Pathology, University of Georgia, Tifton, Georgia, United States of America.ORCID 0000-0003-3724-7341
Nelson D SuassunaEmbrapa Algodão, Santo Antônio de Goiás, GO, Brazil.ORCID 0000-0001-7760-1232
Kassie N ConnerAlabama Cooperative Extension System, Auburn University, Auburn, Alabama, United States of America.
Peng CheeInstitute of Plant Breeding, Genetics and Genomics, University of Georgia, Tifton, Georgia, United States of America.
Robert C KemeraitDepartment of Plant Pathology, University of Georgia, Tifton, Georgia, United States of America.
Phillip RobertsDepartment of Entomology, University of Georgia, Tifton, Georgia, United States of America.
University of Georgia · USAuburn University System · USBrazilian Agricultural Research Corporation · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cotton leafroll dwarf virus (CLRDV) is an emerging virus in cotton production in Georgia and several other Southeastern states in the USA. To better understand the genetic diversity of the virus population, the near complete genome sequences of six isolates from Georgia and one from Alabama were determined. The isolates sequenced were 5,866 nucleotides with seven open reading frames (ORFs). The isolates from Georgia were >94% identical with other isolates from the USA and South America. In the silencing suppressor protein (P0), at amino acid position 72, the isolates from Georgia and Alabama had a valine (V), similar to resistant-breaking 'atypical' genotypes in South America, while the Texas isolate had isoleucine (I), similar to the more aggressive 'typical' genotypes of CLRDV. At position 120, arginine (R) is unique to Georgia and China isolates, but absent in Alabama, Texas and South American isolates. Ten potential recombinant events were detected in the isolates sequenced. An increased understanding of CLRDV population structure and genetic diversity will help develop management strategies for CLRDV in the USA cotton belt.

Indexed as

Genome, ViralGenotypeGossypiumPhylogenyGenetic VariationGeorgiaLuteoviridaeOpen Reading FramesPlant DiseasesRecombination, GeneticUnited StatesViral ProteinsViral Proteins

Identifiers

PMID34232966
PMCPMC8262794
OpenAlexW3182564845

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.