Evidence map›Paper›PMID 34232232›Full record

ArticleChemical communications (Cambridge, England)2021

G-quadruplex DNA inhibits unwinding activity but promotes liquid-liquid phase separation by the DEAD-box helicase Ded1p.

Jun Gao, Zhaofeng Gao, Andrea A Putnam, Alicia K Byrd, Sarah L Venus, John C Marecki, Andrea D Edwards, Haley M Lowe, Eckhard Jankowsky, Kevin D Raney

Open access · hybridAbstract read
In one paragraph

Article in Chemical communications (Cambridge, England), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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  4. Review
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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jun GaoDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA. RaneyKevinD@uams.edu.ORCID http://orcid.org/0000-0001-7146-5786
Zhaofeng GaoCenter for RNA Science and Therapeutics, Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, USA. exj13@case.edu.
Andrea A PutnamCenter for RNA Science and Therapeutics, Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, USA. exj13@case.edu.
Alicia K ByrdDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA. RaneyKevinD@uams.edu.ORCID http://orcid.org/0000-0001-5484-0759
Sarah L VenusCenter for RNA Science and Therapeutics, Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, USA. exj13@case.edu.
John C MareckiDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA. RaneyKevinD@uams.edu.
Andrea D EdwardsDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA. RaneyKevinD@uams.edu.
Haley M LoweDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA. RaneyKevinD@uams.edu.
Eckhard JankowskyCenter for RNA Science and Therapeutics, Department of Biochemistry, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, USA. exj13@case.edu.
Kevin D RaneyDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205, USA. RaneyKevinD@uams.edu.
University of Arkansas for Medical Sciences · USRaNA Therapeutics (United States) · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Enzymes and enzyme complexes in RNA metabolismR35GM118088 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI JANKOWSKY, ECKHARD · 2016 to 2022
$4.3M
Coordination of phase separation and translational control by the RNA helicase DDX3XF30CA247347 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI VENUS, SARAH LINN · 2020 to 2023
$200k
NCATS NIH HHS UL1 TR000039NCI NIH HHS F30 CA247347NIGMS NIH HHS R35 GM118088NIGMS NIH HHS T32 GM007250
6 · The paper itself

Abstract

G-quadruplex DNA interacts with the N-terminal intrinsically disordered domain of the DEAD-box helicase Ded1p, diminishing RNA unwinding activity but enhancing liquid-liquid phase separation of Ded1p in vitro and in cells. The data highlight multifaceted effects of quadruplex DNA on an enzyme with intrinsically disordered domains.

Indexed as

G-QuadruplexesCytoplasmDEAD-box RNA HelicasesDNAIntrinsically Disordered ProteinsPhase TransitionProtein DomainsRNASaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDEAD-box RNA HelicasesDED1 protein, S cerevisiaeDNAIntrinsically Disordered ProteinsRNASaccharomyces cerevisiae Proteins

Identifiers

PMID34232232
PMCPMC8315639
OpenAlexW3180020882

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.