Evidence map›Paper›PMID 34230985›Full record

ArticlePlant cell reports2021

Function identification of miR394 in tomato resistance to Phytophthora infestans.

Yuan-Yuan Zhang, Yu-Hui Hong, Ya-Rong Liu, Jun Cui, Yu-Shi Luan

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 50 citations in OpenAlex.

  1. Exploring the CeRNA landscape in plants: advances, methods, and challenges.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Review
  2. Article
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  14. Research Progress ofJournal of fungi (Basel, Switzerland) · 2023
    Review
  15. Tae-miR397 Negatively Regulates Wheat Resistance toPlants (Basel, Switzerland) · 2023
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Identification of miRNAs Involving Potato-Plants (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yuan-Yuan Zhang *School of Bioengineering, Dalian University of Technology, Dalian, 116024, China.
Yu-Hui Hong *School of Bioengineering, Dalian University of Technology, Dalian, 116024, China.
Ya-Rong LiuSchool of Bioengineering, Dalian University of Technology, Dalian, 116024, China.
Jun CuiSchool of Bioengineering, Dalian University of Technology, Dalian, 116024, China.
Yu-Shi LuanSchool of Bioengineering, Dalian University of Technology, Dalian, 116024, China. ysluan@dlut.edu.cn.ORCID http://orcid.org/0000-0001-9397-9171
Dalian University of Technology · CN

Funding

The National Natural Science Foundation of China 31872116The National Natural Science Foundation of China 32072592
6 · The paper itself

Abstract

key messageMiR394 plays a negative role in tomato resistance to late blight. The lncRNA40787 severing as an eTM for miR394 to regulate LCR and exerting functions in tomato resistance. Tomato (Solanum lycopersicum), which was used as model species for studying the mechanism of plant disease defense, is susceptible to multiple pathogens. Non-coding RNA (ncRNA) has a pivotal role in plants response to biological stresses. It has previously been observed that the expression level of miR394 changed significantly after the infection of various pathogens. However, there has been no detailed investigation of the accumulated or suppressed mechanism of miR394. Our previous study predicted three lncRNAs (lncRNA40787, lncRNA27177, and lncRNA42566) that contain miR394 endogenous target mimics (eTM), which may exist as the competitive endogenous RNAs (ceRNAs) of miR394. In our study, the transcription levels of these three lncRNAs were strongly up-regulated in tomato upon infection with P. infestans. In contrast with the three lncRNAs, the accumulation of miR394 was significantly suppressed. Based on the expression pattern, and value of minimum free energy (mfes) that represents the binding ability between lncRNA and miRNA, lncRNA40787 was chosen for further investigation. Results showed that overexpression of lncRNA40787 reduced the expression of miR394 along with decreased lesion area and enhanced disease resistance. Overexpression of miR394, however, decreased the expression of its target gene Leaf Curling Responsiveness (LCR), and suppressed the synthesis components genes of jasmonic acid (JA), depressing the resistance of tomato to P. infestans infection. Taken together, our findings indicated that miR394 can be decoyed by lncRNA40787, and negatively regulated the expression of LCR to enhance tomato susceptibility under P. infestans infection. Our study provided detailed information on the lncRNA40787-miR394-LCR regulatory network and serves as a reference for future research.

Indexed as

CyclopentanesDisease ResistanceGene Expression Regulation, PlantGene SilencingHost-Pathogen InteractionsMicroRNAsOxylipinsPhytophthora infestansPlant DiseasesPlant ProteinsRNA, Long NoncodingRNA, PlantSolanum lycopersicumCyclopentanesjasmonic acidMicroRNAsOxylipinsPlant ProteinsRNA, Long NoncodingRNA, PlantceRNAlncRNAmiRNAPhytophthora infestansTomato

Identifiers

PMID34230985
OpenAlexW3177824950

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.