Evidence map›Paper›PMID 34230059›Full record

ArticleRNA (New York, N.Y.)2021

A real-time fluorescence assay for CPSF73, the nuclease for pre-mRNA 3'-end processing.

Pedro A Gutierrez, Kirk Baughman, Yadong Sun, Liang Tong

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Molecular Insights into mRNA Polyadenylation and Deadenylation.International journal of molecular sciences · 2022
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Pedro A GutierrezDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Kirk BaughmanDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Yadong SunDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.ORCID 0000-0002-0563-6468
Columbia University · US

Funding

Structural and functional studies of mRNA processing, stability and quality controlR35GM118093 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIANG TONG · 2016 to 2026
$8.5M
NIGMS NIH HHS R35 GM118093
6 · The paper itself

Abstract

CPSF73 is the endonuclease that catalyzes the cleavage reaction for 3'-end processing of mRNA precursors (pre-mRNAs) in two distinct machineries, a canonical machinery for the majority of pre-mRNAs and a U7 snRNP (U7 machinery) for replication-dependent histone pre-mRNAs in animal cells. CPSF73 also possesses 5'-3' exonuclease activity in the U7 machinery, degrading the downstream cleavage product after the endonucleolytic cleavage. Recent studies show that CPSF73 is a potential target for developing anticancer, antimalarial, and antiprotozoal drugs, spurring interest in identifying new small-molecule inhibitors against this enzyme. CPSF73 nuclease activity has so far been demonstrated using a gel-based end-point assay, using radiolabeled or fluorescently labeled RNA substrates. By taking advantage of unique properties of the U7 machinery, we have developed a novel, real-time fluorescence assay for the nuclease activity of CPSF73. This assay is facile and high-throughput, and should also be helpful for the discovery of new CPSF73 inhibitors.

Indexed as

Biological AssayRNA 3' End ProcessingCell-Free SystemCleavage And Polyadenylation Specificity FactorEnzyme AssaysEnzyme InhibitorsFluorescenceFluorescent DyesHistonesHumansModels, MolecularPhenylalaninePiperazinesProteolysisRhodaminesRibonucleoprotein, U7 Small Nuclear5-carboxytetramethylrhodamine succinimidyl esterCleavage And Polyadenylation Specificity FactorCPSF3 protein, humanEnzyme InhibitorsFluorescent DyesHistonesJTE 607PhenylalaninePiperazinesRhodaminesRibonucleoprotein, U7 Small NuclearRNA PrecursorsSmall Molecule Librariesendonucleaseexonucleasehistone pre-mRNA 3′-end processingU7 snRNP

Identifiers

PMID34230059
PMCPMC8457007
OpenAlexW3178352747

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.