Evidence map›Paper›PMID 34228915›Full record

ArticleACS nano2021

Bench-Top Fabrication of Single-Molecule Nanoarrays by DNA Origami Placement.

Rishabh M Shetty, Sarah R Brady, Paul W K Rothemund, Rizal F Hariadi, Ashwin Gopinath

Abstract read
In one paragraph

Article in ACS nano, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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  17. DNA as grabbers and steerers of quantum emitters.Nanophotonics (Berlin, Germany) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rishabh M ShettyBiodesign Center for Molecular Design and Biomimetics (at the Biodesign Institute) at Arizona State University, Tempe, Arizona 85287, United States.ORCID 0000-0003-4384-4038
Sarah R BradyBiodesign Center for Molecular Design and Biomimetics (at the Biodesign Institute) at Arizona State University, Tempe, Arizona 85287, United States.
Paul W K RothemundDepartments of Bioengineering, Computational and Mathematical Sciences, and Computation and Neural Systems, California Institute of Technology, Pasadena, California 91125, United States.ORCID 0000-0002-1653-3202
Rizal F HariadiBiodesign Center for Molecular Design and Biomimetics (at the Biodesign Institute) at Arizona State University, Tempe, Arizona 85287, United States.ORCID 0000-0001-7840-859X
Ashwin GopinathDepartments of Bioengineering, Computational and Mathematical Sciences, and Computation and Neural Systems, California Institute of Technology, Pasadena, California 91125, United States.

Funding

Nanoscale reconstruction of mechanical systems involved in disease pathogenesisDP2AI144247 · NIAID · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI HARIADI, RIZAL FAJAR · 2018 to 2018
$2.4M
NIAID NIH HHS DP2 AI144247
6 · The paper itself

Abstract

Large-scale nanoarrays of single biomolecules enable high-throughput assays while unmasking the underlying heterogeneity within ensemble populations. Until recently, creating such grids which combine the advantages of microarrays and single-molecule experiments (SMEs) has been particularly challenging due to the mismatch between the size of these molecules and the resolution of top-down fabrication techniques. DNA origami placement (DOP) combines two powerful techniques to address this issue: (i) DNA origami, which provides a ∼100 nm self-assembled template for single-molecule organization with 5 nm resolution and (ii) top-down lithography, which patterns these DNA nanostructures, transforming them into functional nanodevices via large-scale integration with arbitrary substrates. Presently, this technique relies on state-of-the-art infrastructure and highly trained personnel, making it prohibitively expensive for researchers. Here, we introduce a cleanroom-free, $1 benchtop technique to create meso-to-macro-scale DNA origami nanoarrays using self-assembled colloidal nanoparticles, thereby circumventing the need for top-down fabrication. We report a maximum yield of 74%, 2-fold higher than the statistical limit of 37% imposed on non-specific molecular loading alternatives. Furthermore, we provide a proof-of-principle for the ability of this nanoarray platform to transform traditionally low-throughput, stochastic, single-molecule assays into high-throughput, deterministic ones, without compromising data quality. Our approach has the potential to democratize single-molecule nanoarrays and demonstrates their utility as a tool for biophysical assays and diagnostics.

Indexed as

NanostructuresNanotechnologyDNAMicroarray AnalysisNucleic Acid ConformationPrintingDNADNA nanotechnologyDNA origami placementnanoarraynanosphere lithographyPoisson statisticsself-assemblysingle molecule experiments

Identifiers

PMID34228915
PMCPMC9701110

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.