Evidence map›Paper›PMID 34224739›Full record

ArticleGastroenterology2021

Recurrent Frameshift Neoantigen Vaccine Elicits Protective Immunity With Reduced Tumor Burden and Improved Overall Survival in a Lynch Syndrome Mouse Model.

Johannes Gebert, Ozkan Gelincik, Mine Oezcan-Wahlbrink, Jason D Marshall, Alejandro Hernandez-Sanchez, Katharina Urban, Mark Long, Eduardo Cortes, Elena Tosti, Eva-Maria Katzenmaier and 18 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Gastroenterology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 109 citations in OpenAlex.

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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 9 institutions in 2 countries.

Johannes GebertDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany. Electronic address: johannes.gebert@med.uni-heidelberg.de.
Ozkan GelincikWeill Cornell Medical College, New York, New York.
Mine Oezcan-WahlbrinkDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany.
Jason D MarshallCancer ImmunoPrevention Laboratory, Frederick National Laboratory for Cancer Research, Frederick, Maryland.
Alejandro Hernandez-SanchezDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany.
Katharina UrbanDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany.
Mark LongDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, New York.
Eduardo CortesDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, New York.
Elena TostiDepartment of Cell Biology, Albert Einstein College of Medicine, New York, New York.
Eva-Maria KatzenmaierDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany.
Yurong SongCancer ImmunoPrevention Laboratory, Frederick National Laboratory for Cancer Research, Frederick, Maryland.
Ali ElsaadiWeill Cornell Medical College, New York, New York.
Nan DengDepartment of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Eduardo VilarDepartment of Clinical Cancer Prevention, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Vera FuchsDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany.
Nina NeliusDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany.
Yan P YuanEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany.
Aysel AhadovaDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany.
Shizuko SeiDivision of Cancer Prevention, National Cancer Institute, Bethesda, Maryland.
Robert H ShoemakerDivision of Cancer Prevention, National Cancer Institute, Bethesda, Maryland.
Asad UmarDivision of Cancer Prevention, National Cancer Institute, Bethesda, Maryland.
Lei WeiDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, New York.
Song LiuDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, New York.
Peer BorkEuropean Molecular Biology Laboratory, Structural and Computational Biology Unit, Heidelberg, Germany; Max Delbrück Centre for Molecular Medicine, Berlin, Germany; Department of Bioinformatics, Biocenter, University of Würzburg, Würzburg, Germany.
Winfried EdelmannDepartment of Cell Biology, Albert Einstein College of Medicine, New York, New York.
Magnus von Knebel DoeberitzDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany. Electronic address: magnus.knebel-doeberitz@med.uni-heidelberg.de.
Steven M LipkinWeill Cornell Medical College, New York, New York. Electronic address: stl2012@med.cornell.edu.
Matthias KloorDepartment of Applied Tumor Biology, Institute of Pathology, University of Heidelberg, Heidelberg, Germany; Clinical Cooperation Unit Applied Tumor Biology, German Cancer Research Center, Heidelberg, Germany. Electronic address: matthias.kloor@med.uni-heidelberg.de.
German Cancer Research Center · DERoswell Park Comprehensive Cancer Center · USCornell University · USNational Cancer Institute · USAlbert Einstein College of Medicine · USFrederick National Laboratory for Cancer Research · USThe University of Texas MD Anderson Cancer Center · USEuropean Molecular Biology Laboratory · DEMax Delbrück Center · DE

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DIANE BODURKA · 1985 to 2026
$290.8M
Immuno-Oncology Translation Network: Data Management and Resource-Sharing Center at RPCIU24CA232979 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI HUTSON, ALAN DAVID, LIU, SONG · 2018 to 2024
$8.9M
YAP1 and RB1 cooperate to regulate lung cancer lineage plasticity and therapeutic resistanceU24CA274159 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI DAVID W. GOODRICH, Alan David Hutson · 2022 to 2026
$8.5M
The Computational Tumor Immunology Core (CTIC)U54CA272688 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI Vivek Mittal · 2022 to 2026
$7.4M
Neoantigen Vaccination for Lynch Syndrome ImmunopreventionU01CA233056 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LIPKIN, STEVEN M, VILAR SANCHEZ, EDUARDO · 2018 to 2022
$3.8M
(PQ1) Adaptive immune and microbial mechanisms regulating Lynch syndrome penetranceR01CA231283 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LIPKIN, STEVEN M · 2018 to 2022
$2.3M
Uncovering the Role of Colorectal Stem Cells on Disease Penetrance in Lynch SyndromeR01CA219463 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI VILAR SANCHEZ, EDUARDO · 2017 to 2021
$1.6M
NCI NIH HHS HHSN261201200039INCI NIH HHS HHSN261201500039CNCI NIH HHS P30 CA016672NCI NIH HHS R01 CA219463NCI NIH HHS R01 CA231283NCI NIH HHS U01 CA233056NCI NIH HHS U24 CA232979NCI NIH HHS U24 CA274159NCI NIH HHS U54 CA272688
6 · The paper itself

Abstract

BACKGROUND &

aimsDNA mismatch repair deficiency drives microsatellite instability (MSI). Cells with MSI accumulate numerous frameshift mutations. Frameshift mutations affecting cancer-related genes may promote tumorigenesis and, therefore, are shared among independently arising MSI tumors. Consequently, such recurrent frameshift mutations can give rise to shared immunogenic frameshift peptides (FSPs) that represent ideal candidates for a vaccine against MSI cancer. Pathogenic germline variants of mismatch repair genes cause Lynch syndrome (LS), a hereditary cancer syndrome affecting approximately 20-25 million individuals worldwide. Individuals with LS are at high risk of developing MSI cancer. Previously, we demonstrated safety and immunogenicity of an FSP-based vaccine in a phase I/IIa clinical trial in patients with a history of MSI colorectal cancer. However, the cancer-preventive effect of FSP vaccination in the scenario of LS has not yet been demonstrated.

methodsA genome-wide database of 488,235 mouse coding mononucleotide repeats was established, from which a set of candidates was selected based on repeat length, gene expression, and mutation frequency. In silico prediction, in vivo immunogenicity testing, and epitope mapping was used to identify candidates for FSP vaccination.

resultsWe identified 4 shared FSP neoantigens (Nacad [FSP-1], Maz [FSP-1], Senp6 [FSP-1], Xirp1 [FSP-1]) that induced CD4/CD8 T cell responses in naïve C57BL/6 mice. Using VCMsh2 mice, which have a conditional knockout of Msh2 in the intestinal tract and develop intestinal cancer, we showed vaccination with a combination of only 4 FSPs significantly increased FSP-specific adaptive immunity, reduced intestinal tumor burden, and prolonged overall survival. Combination of FSP vaccination with daily naproxen treatment potentiated immune response, delayed tumor growth, and prolonged survival even more effectively than FSP vaccination alone.

conclusionsOur preclinical findings support a clinical strategy of recurrent FSP neoantigen vaccination for LS cancer immunoprevention.

Indexed as

Frameshift MutationImmunogenetic PhenomenaAdjuvants, ImmunologicAnimalsAntigens, NeoplasmAnti-Inflammatory Agents, Non-SteroidalCancer VaccinesColorectal Neoplasms, Hereditary NonpolyposisDatabases, GeneticDisease Models, AnimalEpitopesImmunity, CellularImmunity, HumoralMiceMice, Inbred C57BLMice, KnockoutAdjuvants, ImmunologicAntigens, NeoplasmAnti-Inflammatory Agents, Non-SteroidalCancer VaccinesEpitopesMsh2 protein, mouseMutS Homolog 2 ProteinNaproxenPeptide FragmentsColorectal CancerFrameshift NeoantigensLynch SyndromeMouse ModelPreventive Cancer Vaccine

Identifiers

PMID34224739
PMCPMC10184299
OpenAlexW3175643852

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.