ArticleBioscience reports2021
Genome survey and microsatellite motif identification of Pogonophryne albipinna.
Article in Bioscience reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed.
- Comprehensive Whole-Genome Survey and Analysis of the Naozhou Stock of Large Yellow Croakers (Animals : an open access journal from MDPI · 2025Article
- Intron turnover of slc26a1 and slc26a2 and convergence of intron insertion sites.Scientific reports · 2025Article
- Chromosome-level genome assembly and annotation of the Antarctica whitefin plunderfish Pogonophryne albipinna.Scientific data · 2023Article
- Genome Survey Sequencing and Genetic Background Characterization ofPlants (Basel, Switzerland) · 2022Article
- Whole-Genome Survey Analyses Provide a New Perspective for the Evolutionary Biology of Shimofuri Goby,Animals : an open access journal from MDPI · 2022Article
- Genomic Survey and Microsatellite Marker Investigation of Patagonian Moray Cod (Animals : an open access journal from MDPI · 2022Article
- A First Genome Survey and Genomic SSR Marker Analysis ofAnimals : an open access journal from MDPI · 2021Article
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The genus Pogonophryne is a speciose group that includes 28 species inhabiting the coastal or deep waters of the Antarctic Southern Ocean. The genus has been divided into five species groups, among which the P. albipinna group is the most deep-living group and is characterized by a lack of spots on the top of the head. Here, we carried out genome survey sequencing of P. albipinna using the Illumina HiSeq platform to estimate the genomic characteristics and identify genome-wide microsatellite motifs. The genome size was predicted to be ∼883.8 Mb by K-mer analysis (K = 25), and the heterozygosity and repeat ratio were 0.289 and 39.03%, respectively. The genome sequences were assembled into 571624 contigs, covering a total length of ∼819.3 Mb with an N50 of 2867 bp. A total of 2217422 simple sequence repeat (SSR) motifs were identified from the assembly data, and the number of repeats decreased as the length and number of repeats increased. These data will provide a useful foundation for the development of new molecular markers for the P. albipinna group as well as for further whole-genome sequencing of P. albipinna.
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