Evidence map›Paper›PMID 34221066›Full record

ArticleJournal of circadian rhythms2021

Genes Relevant to Tissue Response to Cancer Therapy Display Diurnal Variation in mRNA Expression in Human Oral Mucosa.

Fangyi Gu, Eduardo Cortes Gomez, Jianhong Chen, Matthew F Buas, Nicolas F Schlecht, Karen Hulme, Shweta Vishwas Kulkarni, Prashant K Singh, Richard O'Connor, Christine B Ambrosone and 2 more

Open access · goldAbstract read
In one paragraph

Article in Journal of circadian rhythms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Fangyi GuDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, US.
Eduardo Cortes GomezDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, US.
Jianhong ChenDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, US.
Matthew F BuasDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, US.
Nicolas F SchlechtDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, US.
Karen HulmeDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, US.
Shweta Vishwas KulkarniSchool of Public Health, University of Buffalo, US.
Prashant K SinghCenter for Personalized Medicine, Roswell Park Comprehensive Cancer Center, US.
Richard O'ConnorDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, US.
Christine B AmbrosoneDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, US.
Anurag K SinghDepartment of Radiation Medicine, Roswell Park Comprehensive Cancer Center, US.
Jianmin WangDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, US.
Roswell Park Comprehensive Cancer Center · USUniversity at Buffalo, State University of New York · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
University of Buffalo Clinical and Translational Science Institute - Supplement SchulyerUL1TR001412 · NCATS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI MURPHY, TIMOTHY F · 2015 to 2024
$33.8M
NCATS NIH HHS UL1 TR001412NCI NIH HHS P30 CA016056
6 · The paper itself

Abstract

backgroundTo address a critical gap for application of cancer chronotherapy of when would be the best time(s) for treating an individual cancer patient, we conducted a pilot study to characterize diurnal variations of gene expression in oral mucosal tissue, which is vulnerable to damage from cancer therapies.

methodsWe conducted RNA-seq assay on individual oral mucosal samples collected from 11 healthy volunteers every 4 hours (6 time points). Using a cosine-based method, we estimated the individual and average values of peak-time and amplitude for each gene. Correlations between gene expression peak-times and age was examined, adjusting for individual's sleep timing.

resultsAmong candidate gene pathways that are relevant to treatment response, 7 of 16 genes (

conclusionIn oral mucosa, expression of some genes relevant to treatment response displayed diurnal variation. These genes may be candidates for development of biomarkers for optimizing individual timing of cancer therapy using non-invasively collected oral mucosa.

Indexed as

biomarkerscancer therapychronotherapycircadian rhythmoral mucosa

Identifiers

PMID34221066
PMCPMC8231453
OpenAlexW3174261160

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.