Evidence map›Paper›PMID 34220587›Full record

ArticleFrontiers in psychiatry2021

Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies.

Rayus Kuplicki, James Touthang, Obada Al Zoubi, Ahmad Mayeli, Masaya Misaki, NeuroMAP-Investigators, Robin L Aupperle, T Kent Teague, Brett A McKinney, Martin P Paulus and 1 more

Abstract read
In one paragraph

Article in Frontiers in psychiatry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Rayus KuplickiLaureate Institute for Brain Research, Tulsa, OK, United States.
James TouthangLaureate Institute for Brain Research, Tulsa, OK, United States.
Obada Al ZoubiLaureate Institute for Brain Research, Tulsa, OK, United States.
Ahmad MayeliLaureate Institute for Brain Research, Tulsa, OK, United States.
Masaya MisakiLaureate Institute for Brain Research, Tulsa, OK, United States.
NeuroMAP-Investigators
Robin L AupperleLaureate Institute for Brain Research, Tulsa, OK, United States.
T Kent TeagueDepartment of Surgery, University of Oklahoma School of Community Medicine, Tulsa, OK, United States.
Brett A McKinneyDepartment of Mathematics, University of Tulsa, Tulsa, OK, United States.
Martin P PaulusLaureate Institute for Brain Research, Tulsa, OK, United States.
Jerzy BodurkaLaureate Institute for Brain Research, Tulsa, OK, United States.

Funding

The Center for Neuroscience-based Mental Health Assessment and Prediction (NEUROMAP)P20GM121312 · NIGMS · LAUREATE INSTITUTE FOR BRAIN RESEARCH · PI Maëlle Camille Marie Gueguen · 2017 to 2026
$23.7M
NIGMS NIH HHS P20 GM121312
6 · The paper itself

Abstract

Neuroscience studies require considerable bioinformatic support and expertise. Numerous high-dimensional and multimodal datasets must be preprocessed and integrated to create robust and reproducible analysis pipelines. We describe a common data elements and scalable data management infrastructure that allows multiple analytics workflows to facilitate preprocessing, analysis and sharing of large-scale multi-level data. The process uses the Brain Imaging Data Structure (BIDS) format and supports MRI, fMRI, EEG, clinical, and laboratory data. The infrastructure provides support for other datasets such as Fitbit and flexibility for developers to customize the integration of new types of data. Exemplar results from 200+ participants and 11 different pipelines demonstrate the utility of the infrastructure.

Indexed as

bids formatcommon data elementdata processing pipelineshuman brainlarge-scale studiesmulti-level assessmentneuroimagingscalable analytics

Identifiers

PMID34220587
PMCPMC8247461

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.