Evidence map›Paper›PMID 34216544›Full record

ArticleMolecular cell2021

Replication gaps are a key determinant of PARP inhibitor synthetic lethality with BRCA deficiency.

Ke Cong, Min Peng, Arne Nedergaard Kousholt, Wei Ting C Lee, Silviana Lee, Sumeet Nayak, John Krais, Pamela S VanderVere-Carozza, Katherine S Pawelczak, Jennifer Calvo and 6 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 224 papers.

0numbers the graph read from it
0cells of the map it votes in
224citing papers in PubMed
20.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

224 citing papers in PubMed, 302 citations in OpenAlex.

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164 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Ke CongDepartment of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Min PengDepartment of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Arne Nedergaard KousholtDivision of Molecular Pathology, Oncode Institute, the Netherlands Cancer Institute, 1066CX Amsterdam, the Netherlands.
Wei Ting C LeeDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Silviana LeeDepartment of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Sumeet NayakDepartment of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
John KraisMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA 19111, USA.
Pamela S VanderVere-CarozzaDepartment of Medicine, Indiana University School of Medicine, Indianapolis, IN 46202, USA.
Katherine S PawelczakNERx Biosciences, 212 W. 10th St., Suite A480, Indianapolis, IN 46202, USA.
Jennifer CalvoDepartment of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Nicholas J PanzarinoDepartment of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
John J TurchiDepartment of Medicine, Indiana University School of Medicine, Indianapolis, IN 46202, USA; NERx Biosciences, 212 W. 10th St., Suite A480, Indianapolis, IN 46202, USA.
Neil JohnsonMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA 19111, USA.
Jos JonkersDivision of Molecular Pathology, Oncode Institute, the Netherlands Cancer Institute, 1066CX Amsterdam, the Netherlands.
Eli RothenbergDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Sharon B CantorDepartment of Molecular, Cell, and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: sharon.cantor@umassmed.edu.
University of Massachusetts Chan Medical School · USFox Chase Cancer Center · USNĒRx BioSciences (United States) · USNew York University · USIndiana University – Purdue University Indianapolis · USOncode Institute · NLThe Netherlands Cancer Institute · NL

Funding

Structural determinants of Pol theta functionP01CA247773 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Gaorav P. Gupta · 2020 to 2026
$15.2M
Compensatory Mechanisms that Promote Homologous Recombination in BRCA1 Mutant CancersR01CA214799 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Neil Johnson · 2017 to 2026
$4.3M
Mechanisms of Human DNA Double-Strand Break Repair via Quantitative Single-Molecule Imaging - Equipment SupplementR35GM134947 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Eli Rothenberg · 2020 to 2026
$3.4M
Mechanism and Fidelity of RAG mediated DNA recombinationR01AI153040 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ROTHENBERG, ELI · 2020 to 2024
$2.7M
Defining BRCA replication dysfunction in therapy responseR01CA254037 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CANTOR, SHARON B · 2020 to 2025
$2.6M
Novel DNA damage response therapeutics targeting replication protein AR01CA257430 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI TURCHI, JOHN J. · 2021 to 2025
$2.4M
FANCJ dependent pathways in replication stressR01CA225018 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CANTOR, SHARON B · 2018 to 2022
$1.9M
Dissecting BRCA1-PALB2 Activity in DNA Repair and DevelopmentR01GM135293 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI JOHNSON, NEIL · 2020 to 2023
$1.9M
NCI NIH HHS P01 CA247773NCI NIH HHS R01 CA214799NCI NIH HHS R01 CA225018NCI NIH HHS R01 CA254037NCI NIH HHS R01 CA257430NIAID NIH HHS R01 AI153040NIGMS NIH HHS R01 GM135293NIGMS NIH HHS R35 GM134947
6 · The paper itself

Abstract

Mutations in BRCA1 or BRCA2 (BRCA) is synthetic lethal with poly(ADP-ribose) polymerase inhibitors (PARPi). Lethality is thought to derive from DNA double-stranded breaks (DSBs) necessitating BRCA function in homologous recombination (HR) and/or fork protection (FP). Here, we report instead that toxicity derives from replication gaps. BRCA1- or FANCJ-deficient cells, with common repair defects but distinct PARPi responses, reveal gaps as a distinguishing factor. We further uncouple HR, FP, and fork speed from PARPi response. Instead, gaps characterize BRCA-deficient cells, are diminished upon resistance, restored upon resensitization, and, when exposed, augment PARPi toxicity. Unchallenged BRCA1-deficient cells have elevated poly(ADP-ribose) and chromatin-associated PARP1, but aberrantly low XRCC1 consistent with defects in backup Okazaki fragment processing (OFP). 53BP1 loss resuscitates OFP by restoring XRCC1-LIG3 that suppresses the sensitivity of BRCA1-deficient cells to drugs targeting OFP or generating gaps. We highlight gaps as a determinant of PARPi toxicity changing the paradigm for synthetic lethal interactions.

Indexed as

AnimalsBRCA1 ProteinCell LineCisplatinDNADNA ReplicationDNA, Single-StrandedDrug Resistance, NeoplasmFanconi Anemia Complementation Group ProteinsHomologous RecombinationHumansMiceMice, Inbred NODPoly(ADP-ribose) Polymerase InhibitorsRad51 RecombinaseReplication Protein ABRCA1 ProteinBRCA1 protein, humanBRIP1 protein, humanCisplatinDNADNA, Single-StrandedFanconi Anemia Complementation Group ProteinsOkazaki fragmentsPoly(ADP-ribose) Polymerase InhibitorsRAD51 protein, humanRad51 RecombinaseReplication Protein ARNA HelicasesRPA1 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1BRCA1/BRCA2Fanconi anemia (FA)fork protectionhomologous recombinationOkazaki fragment processingPARP inhibitorparylationreplication gapsssDNAsynthetic lethal

Identifiers

PMID34216544
PMCPMC9089372
OpenAlexW3176275742

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.