Evidence map›Paper›PMID 34215729›Full record

ArticleNature communications2021

Quantifying nitrogen fixation by heterotrophic bacteria in sinking marine particles.

Subhendu Chakraborty, Ken H Andersen, André W Visser, Keisuke Inomura, Michael J Follows, Lasse Riemann

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Particle-associated NScience advances · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. A diazotrophy-ammoniotrophy dual growth model for the sulfate reducing bacteriumComputational and structural biotechnology journal · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Subhendu ChakrabortyDepartment of Biology, Marine Biological Section, University of Copenhagen, Helsingør, Denmark. schakraborty@bio.ku.dk.ORCID http://orcid.org/0000-0002-2904-9313
Ken H AndersenCentre for Ocean Life, DTU Aqua, Technical University of Denmark, Kgs.Lyngby, Denmark.ORCID http://orcid.org/0000-0002-8478-3430
André W VisserCentre for Ocean Life, DTU Aqua, Technical University of Denmark, Kgs.Lyngby, Denmark.ORCID http://orcid.org/0000-0002-1604-7263
Keisuke InomuraGraduate School of Oceanography, University of Rhode Island, Narragansett, RI, USA.ORCID http://orcid.org/0000-0001-9232-7032
Michael J FollowsDepartment of Earth, Atmospheric and Planetary Sciences, MIT, Cambridge, MA, USA.
Lasse RiemannDepartment of Biology, Marine Biological Section, University of Copenhagen, Helsingør, Denmark. lriemann@bio.ku.dk.ORCID http://orcid.org/0000-0001-9207-2543

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrogen ([Formula: see text]) fixation by heterotrophic bacteria associated with sinking particles contributes to marine N cycling, but a mechanistic understanding of its regulation and significance are not available. Here we develop a mathematical model for unicellular heterotrophic bacteria growing on sinking marine particles. These bacteria can fix [Formula: see text] under suitable environmental conditions. We find that the interactive effects of polysaccharide and polypeptide concentrations, sinking speed of particles, and surrounding [Formula: see text] and [Formula: see text] concentrations determine the [Formula: see text] fixation rate inside particles. [Formula: see text] fixation inside sinking particles is mainly fueled by [Formula: see text] respiration rather than [Formula: see text] respiration. Our model suggests that anaerobic processes, including heterotrophic [Formula: see text] fixation, can take place in anoxic microenvironments inside sinking particles even in fully oxygenated marine waters. The modelled [Formula: see text] fixation rates are similar to bulk rates measured in the aphotic ocean, and our study consequently suggests that particle-associated heterotrophic [Formula: see text] fixation contributes significantly to oceanic [Formula: see text] fixation.

Indexed as

BacteriaEcologyHeterotrophic ProcessesModels, TheoreticalNitrogenNitrogen FixationOceans and SeasPeptidesPolysaccharidesSeawaterTemperatureNitrogenPeptidesPolysaccharides

Identifiers

PMID34215729
PMCPMC8253789

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.