Evidence map›Paper›PMID 34215320›Full record

ArticleClinical epigenetics2021

PRDX1 gene-related epi-cblC disease is a common type of inborn error of cobalamin metabolism with mono- or bi-allelic MMACHC epimutations.

Catia Cavicchi, Abderrahim Oussalah, Silvia Falliano, Lorenzo Ferri, Alessia Gozzini, Serena Gasperini, Serena Motta, Miriam Rigoldi, Giancarlo Parenti, Albina Tummolo and 13 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 2 countries.

Catia CavicchiMolecular and Cell Biology Laboratory of Neurometabolic Diseases, Paediatric Neurology Unit and Laboratories, Meyer Children's Hospital, Viale Pieraccini 24, 50139, Florence, Italy.
Abderrahim OussalahINSERM, UMR_S1256 Nutrition-Genetics-Environmental Risk Exposure and Reference Centre of Inborn Metabolism Diseases, University of Lorraine and University Hospital Centre of Nancy (CHRU Nancy), Nancy, France.
Silvia FallianoMolecular and Cell Biology Laboratory of Neurometabolic Diseases, Paediatric Neurology Unit and Laboratories, Meyer Children's Hospital, Viale Pieraccini 24, 50139, Florence, Italy.
Lorenzo FerriMolecular and Cell Biology Laboratory of Neurometabolic Diseases, Paediatric Neurology Unit and Laboratories, Meyer Children's Hospital, Viale Pieraccini 24, 50139, Florence, Italy.
Alessia GozziniMolecular and Cell Biology Laboratory of Neurometabolic Diseases, Paediatric Neurology Unit and Laboratories, Meyer Children's Hospital, Viale Pieraccini 24, 50139, Florence, Italy.
Serena GasperiniRare Metabolic Disease Unit, Department of Paediatrics, Fondazione MBBM, Monza, Italy.
Serena MottaRare Metabolic Disease Unit, Department of Paediatrics, Fondazione MBBM, Monza, Italy.
Miriam RigoldiMario Negri Institute for Pharmacological Research IRCCS, Bergamo, Italy.
Giancarlo ParentiMetabolic Unit, Federico II Hospital, Napoli, Italy.
Albina TummoloMetabolic Disease Unit, Giovanni XXIII Hospital, Bari, Italy.
Concetta MeliMetabolic Disease Unit, G. Rodolico Hospital, Catania, Italy.
Francesca MenniFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Paediatric Highly Intensive Care Unit, Milan, Italy.
Francesca FurlanFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Paediatric Highly Intensive Care Unit, Milan, Italy.
Marta DaniottiMetabolic and Muscular Unit, Meyer Children's Hospital, Florence, Italy.
Sabrina MalvagiaNewborn Screening, Biochemistry and Pharmacology Laboratory, Meyer Children's Hospital, Florence, Italy.
Giancarlo la MarcaNewborn Screening, Biochemistry and Pharmacology Laboratory, Meyer Children's Hospital, Florence, Italy.
Céline CheryINSERM, UMR_S1256 Nutrition-Genetics-Environmental Risk Exposure and Reference Centre of Inborn Metabolism Diseases, University of Lorraine and University Hospital Centre of Nancy (CHRU Nancy), Nancy, France.
Pierre-Emmanuel MorangeAix-Marseille University, INRAE, INSERM, C2VN, Marseille, France.
David TregouetINSERM, UMR_S937, ICAN Institute, Université Pierre et Marie Curie, Paris, France.
Maria Alice DonatiMetabolic and Muscular Unit, Meyer Children's Hospital, Florence, Italy.
Renzo GuerriniMolecular and Cell Biology Laboratory of Neurometabolic Diseases, Paediatric Neurology Unit and Laboratories, Meyer Children's Hospital, Viale Pieraccini 24, 50139, Florence, Italy.
Jean-Louis GuéantINSERM, UMR_S1256 Nutrition-Genetics-Environmental Risk Exposure and Reference Centre of Inborn Metabolism Diseases, University of Lorraine and University Hospital Centre of Nancy (CHRU Nancy), Nancy, France.
Amelia MorroneMolecular and Cell Biology Laboratory of Neurometabolic Diseases, Paediatric Neurology Unit and Laboratories, Meyer Children's Hospital, Viale Pieraccini 24, 50139, Florence, Italy. amelia.morrone@meyer.it.ORCID 0000-0003-2890-8179
Centre Hospitalier Régional et Universitaire de Nancy · FRInserm · FRMeyer Children's Hospital · ITFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITFederico II University Hospital · ITMario Negri Institute for Pharmacological Research · IT

Funding

FHU ARRIMAGE and French Agence Nationale de la Recherche ANR-15-IDEX-04-LUE
6 · The paper itself

Abstract

backgroundThe role of epigenetics in inborn errors of metabolism (IEMs) is poorly investigated. Epigenetic changes can contribute to clinical heterogeneity of affected patients but could also be underestimated determining factors in the occurrence of IEMs. An epigenetic cause of IEMs has been recently described for the autosomal recessive methylmalonic aciduria and homocystinuria, cblC type (cblC disease), and it has been named epi-cblC. Epi-cblC has been reported in association with compound heterozygosity for a genetic variant and an epimutation at the MMACHC locus, which is secondary to a splicing variant (c.515-1G > T or c.515-2A > T) at the adjacent PRDX1 gene. Both these variants cause aberrant antisense transcription and cis-hypermethylation of the MMACHC gene promotor with subsequent silencing. Until now, only nine epi-cblC patients have been reported.

methodsWe report clinical/biochemical assessment, MMACHC/PRDX1 gene sequencing and genome-wide DNA methylation profiling in 11 cblC patients who had an inconclusive MMACHC gene testing. We also compare clinical phenotype of epi-cblC patients with that of canonical cblC patients.

resultsAll patients turned out to have the epi-cblC disease. One patient had a bi-allelic MMACHC epimutation due to the homozygous PRDX1:c.515-1G > T variant transmitted by both parents. We found that the bi-allelic epimutation produces the complete silencing of MMACHC in the patient's fibroblasts. The remaining ten patients had a mono-allelic MMACHC epimutation, due to the heterozygous PRDX1:c.515-1G > T, in association with a mono-allelic MMACHC genetic variant. Epi-cblC disease has accounted for about 13% of cblC cases diagnosed by newborn screening in the Tuscany and Umbria regions since November 2001. Comparative analysis showed that clinical phenotype of epi-cblC patients is similar to that of canonical cblC patients.

conclusionsWe provide evidence that epi-cblC is an underestimated cause of inborn errors of cobalamin metabolism and describe the first instance of epi-cblC due to a bi-allelic MMACHC epimutation. MMACHC epimutation/PRDX1 mutation analyses should be part of routine genetic testing for all patients presenting with a metabolic phenotype that combines methylmalonic aciduria and homocystinuria.

Indexed as

DNA MethylationFemaleHumansInfant, NewbornMaleMetabolism, Inborn ErrorsNeonatal ScreeningOxidoreductasesPeroxiredoxinsVitamin B 12MMACHC protein, humanOxidoreductasesPeroxiredoxinsPRDX1 protein, humanVitamin B 12cblC diseasecblC typeCpG islandEpi-cblCExpanded newborn screening (NBS)Methylmalonic aciduria and homocystinuriaPromoter hypermethylationSecondary epimutation

Identifiers

PMID34215320
PMCPMC8254308
OpenAlexW3176057387

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.