Evidence map›Paper›PMID 34215175›Full record

ArticleBMC microbiology2021

Pre-processing tissue specimens with a tissue homogenizer: clinical and microbiological evaluation.

Erlangga Yusuf, Marieke Pronk, Mireille van Westreenen

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Erlangga YusufDepartment of Medical Microbiology and Infectious Diseases, Erasmus MC University Medical Center, Doctor Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands. e.yusuf@erasmusmc.nl.ORCID 0000-0003-4779-2191
Marieke PronkDepartment of Medical Microbiology and Infectious Diseases, Erasmus MC University Medical Center, Doctor Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands.
Mireille van WestreenenDepartment of Medical Microbiology and Infectious Diseases, Erasmus MC University Medical Center, Doctor Molewaterplein 40, 3015 GD, Rotterdam, the Netherlands.
Erasmus MC · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTissues are valuable specimens in diagnostic microbiology because they are often obtained by invasive methods, and effort should thus be taken to maximize microbiological yield. The objective of this study was to evaluate the added value of using tissue pre-processing (tissue homogenizer instrument gentleMACS Dissociator) in detecting microorganisms responsible for infections.

methodsWe included 104 randomly collected tissue samples, 41 (39.4 %) bones and 63 (60.6 %) soft tissues, many of those (42/104 (40.4 %)) were of periprosthetic origins. We compared the agreement between pre-processing tissues using tissue homogenizer with routine microbiology diagnostic procedure, and we calculated the performance of these methods when clinical infections were used as reference standard.

resultsThere was no significant difference between the two methods (McNemar test, p = 0.3). Among the positive culture using both methods (n = 62), 61 (98.4 %) showed at least one similar microorganism. Exactly similar microorganisms were found in 42/62 (67.7 %) of the samples. From the included tissues, 55/ 104 (52.9 %) were deemed as infected. We found that the sensitivity of homogenized tissue procedure was lower (83.6 %) than when tissue was processed using tissue homogenizer (89.1 %). Sub-analysis on periprosthetic tissues and soft or bone tissues showed comparable results.

conclusionsThe added value of GentleMACS Dissociator tissue homogenizer is limited in comparison to routine tissue processing.

Indexed as

Bacterial InfectionsHumansMicrobiological TechniquesSpecimen Handlingculturemicrobiological yieldtissuetissue homogenizer

Identifiers

PMID34215175
PMCPMC8254327
OpenAlexW3176894179

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.