Evidence map›Paper›PMID 34214126›Full record

ArticlePloS one2021

Spectral estimation for detecting low-dimensional structure in networks using arbitrary null models.

Mark D Humphries, Javier A Caballero, Mat Evans, Silvia Maggi, Abhinav Singh

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Fast-local and slow-global neural ensembles in the mouse brain.Network neuroscience (Cambridge, Mass.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mark D HumphriesSchool of Psychology, University of Nottingham, Nottingham, United Kingdom.ORCID 0000-0002-1906-2581
Javier A CaballeroFaculty of Biology, Medicine, and Health, University of Manchester, Manchester, United Kingdom.ORCID 0000-0002-7243-3345
Mat EvansSchool of Psychology, University of Nottingham, Nottingham, United Kingdom.
Silvia MaggiSchool of Psychology, University of Nottingham, Nottingham, United Kingdom.
Abhinav SinghSchool of Psychology, University of Nottingham, Nottingham, United Kingdom.

Funding

Medical Research Council MR/J008648/1Medical Research Council MR/J008648/2Medical Research Council MR/P005659/1Medical Research Council MR/P005659/2Medical Research Council MR/S025944/1
6 · The paper itself

Abstract

Discovering low-dimensional structure in real-world networks requires a suitable null model that defines the absence of meaningful structure. Here we introduce a spectral approach for detecting a network's low-dimensional structure, and the nodes that participate in it, using any null model. We use generative models to estimate the expected eigenvalue distribution under a specified null model, and then detect where the data network's eigenspectra exceed the estimated bounds. On synthetic networks, this spectral estimation approach cleanly detects transitions between random and community structure, recovers the number and membership of communities, and removes noise nodes. On real networks spectral estimation finds either a significant fraction of noise nodes or no departure from a null model, in stark contrast to traditional community detection methods. Across all analyses, we find the choice of null model can strongly alter conclusions about the presence of network structure. Our spectral estimation approach is therefore a promising basis for detecting low-dimensional structure in real-world networks, or lack thereof.

Indexed as

Spectrum AnalysisAlgorithmsAnimalsBrainGene Expression RegulationMiceModels, Theoretical

Identifiers

PMID34214126
PMCPMC8253422

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.