Evidence map›Paper›PMID 34213045›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2021

Midkine Interaction with Chondroitin Sulfate Model Synthetic Tetrasaccharides and Their Mimetics: The Role of Aromatic Interactions.

María José García-Jiménez, Sergio Gil-Caballero, Susana Maza, Francisco Corzana, Francisco Juárez-Vicente, Jonathan R Miles, Kazuma Sakamoto, Kenji Kadomatsu, Mario García-Domínguez, José L de Paz and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

María José García-JiménezGlycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), cicCartuja, CSIC, Universidad de Sevilla, C/ Américo Vespucio, 49, 41092, Sevilla, Spain.
Sergio Gil-CaballeroGlycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), cicCartuja, CSIC, Universidad de Sevilla, C/ Américo Vespucio, 49, 41092, Sevilla, Spain.
Susana MazaGlycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), cicCartuja, CSIC, Universidad de Sevilla, C/ Américo Vespucio, 49, 41092, Sevilla, Spain.
Francisco CorzanaDepartment of Chemistry, University of La Rioja, Logroño (La Rioja), Spain.
Francisco Juárez-VicenteAndalusian Center for Molecular Biology and Regenerative Medicine-CABIMER, CSIC-Universidad de Sevilla-Universidad Pablo de Olavide, C/ Américo Vespucio, 24, 41092, Sevilla, Spain.
Jonathan R MilesGlycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), cicCartuja, CSIC, Universidad de Sevilla, C/ Américo Vespucio, 49, 41092, Sevilla, Spain.
Kazuma SakamotoInstitute for Glyco-core Research (iGCORE), Departments of Biochemistry, Nagoya University Graduate School of Medicine, 65 Tsurumai-cho, Showa-ku, Nagoya, 466-8550, Japan.
Kenji KadomatsuInstitute for Glyco-core Research (iGCORE), Departments of Biochemistry, Nagoya University Graduate School of Medicine, 65 Tsurumai-cho, Showa-ku, Nagoya, 466-8550, Japan.
Mario García-DomínguezAndalusian Center for Molecular Biology and Regenerative Medicine-CABIMER, CSIC-Universidad de Sevilla-Universidad Pablo de Olavide, C/ Américo Vespucio, 24, 41092, Sevilla, Spain.
José L de PazGlycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), cicCartuja, CSIC, Universidad de Sevilla, C/ Américo Vespucio, 49, 41092, Sevilla, Spain.
Pedro M NietoGlycosystems Laboratory, Instituto de Investigaciones Químicas (IIQ), cicCartuja, CSIC, Universidad de Sevilla, C/ Américo Vespucio, 49, 41092, Sevilla, Spain.ORCID http://orcid.org/0000-0002-4074-9011
Centro de Investigaciones Científicas Isla de la Cartuja · ESCentro Andaluz de Biología Molecular y Medicina Regenerativa · ESNagoya University · JPUniversidad de La Rioja · ESUniversitat de Girona · ES

Funding

Agencia de Innovación y Desarrollo de Andalucía FQM-1303Ministerio de Ciencia, Innovación y Universidades CTQ2015-70134-PMinisterio de Ciencia, Innovación y Universidades PGC2018-099497-B-100Ministerio de Ciencia, Innovación y Universidades RTI2018-099592-B-C21
6 · The paper itself

Abstract

Midkine (MK) is a neurotrophic factor that participates in the embryonic central nervous system (CNS) development and neural stem cell regulation, interacting with sulfated glycosaminoglycans (GAGs). Chondroitin sulfate (CS) is the natural ligand in the CNS. In this work, we describe the interactions between a library of synthetic models of CS-types and mimics. We did a structural study of this library by NMR and MD (Molecular Dynamics), concluding that the basic shape is controlled by similar geometry of the glycosidic linkages. Their 3D structures are a helix with four residues per turn, almost linear. We have studied the tetrasaccharide-midkine complexes by ligand observed NMR techniques and concluded that the shape of the ligands does not change upon binding. The ligand orientation into the complex is very variable. It is placed inside the central cavity of MK formed by the two structured beta-sheets domains linked by an intrinsically disordered region (IDR). Docking analysis confirmed the participation of aromatics residues from MK completed with electrostatic interactions. Finally, we test the biological activity by increasing the MK expression using CS tetrasaccharides and their capacity in enhancing the growth stimulation effect of MK in NIH3T3 cells.

Indexed as

Chondroitin SulfatesOligosaccharidesAnimalsGlycosaminoglycansMiceMidkineNIH 3T3 CellsChondroitin SulfatesGlycosaminoglycansMidkineOligosaccharidescarbohydrate-protein complexeschondroitin sulfateMDmidkineSTD NMR spectroscopytransient NMRspectroscopy

Identifiers

PMID34213045
PMCPMC8457220
OpenAlexW3176908050

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.