Evidence map›Paper›PMID 34212892›Full record

ArticleJournal of synchrotron radiation2021

PyPhase - a Python package for X-ray phase imaging.

Max Langer, Yuhe Zhang, Diogo Figueirinhas, Jean Baptiste Forien, Kannara Mom, Claire Mouton, Rajmund Mokso, Pablo Villanueva-Perez

Abstract read
In one paragraph

Article in Journal of synchrotron radiation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. HoToPy: a toolbox for X-ray holo-tomography in Python.Journal of synchrotron radiation · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Max LangerUniv Lyon, INSA Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, U1206, F-69621 Villeurbanne, France.ORCID 0000-0002-5821-9617
Yuhe ZhangDivision of Synchrotron Radiation Research and NanoLund, Department of Physics, Lund University, SE-221 00 Lund, Sweden.ORCID 0000-0003-2718-6434
Diogo FigueirinhasDivision of Packaging Logistics, Faculty of Engineering, Lund University, SE-22100 Lund, Sweden.
Jean Baptiste ForienLawrence Livermore National Laboratory, Livermore, CA 94550, USA.ORCID 0000-0002-9229-2455
Kannara MomUniv Lyon, INSA Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, U1206, F-69621 Villeurbanne, France.
Claire MoutonUniv Lyon, INSA Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, U1206, F-69621 Villeurbanne, France.
Rajmund MoksoDivision of Solid Mechanics, Faculty of Engineering, Lund University, SE-22100 Lund, Sweden.
Pablo Villanueva-PerezDivision of Synchrotron Radiation Research and NanoLund, Department of Physics, Lund University, SE-221 00 Lund, Sweden.ORCID 0000-0002-4671-790X

Funding

Office of Laboratory Directed Research and Development (LDRD) 19-ERD-022US Department. of Energy DE-AC52-07NA27344
6 · The paper itself

Abstract

X-ray propagation-based imaging techniques are well established at synchrotron radiation and laboratory sources. However, most reconstruction algorithms for such image modalities, also known as phase-retrieval algorithms, have been developed specifically for one instrument by and for experts, making the development and diffusion of such techniques difficult. Here, PyPhase, a free and open-source package for propagation-based near-field phase reconstructions, which is distributed under the CeCILL license, is presented. PyPhase implements some of the most popular phase-retrieval algorithms in a highly modular framework supporting its deployment on large-scale computing facilities. This makes the integration, the development of new phase-retrieval algorithms, and the deployment on different computing infrastructures straightforward. Its capabilities and simplicity are presented by application to data acquired at the synchrotron source MAX IV (Lund, Sweden).

Indexed as

SoftwareAlgorithmsImage Processing, Computer-AssistedMicroscopy, Phase-ContrastSynchrotronsTomography, X-Ray ComputedX-Raysholographyphase contrastphase retrievaltomographyX-ray imaging

Identifiers

PMID34212892
PMCPMC8284402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.