Evidence map›Paper›PMID 34212151›Full record

ArticleRSC chemical biology2021

Bioorthogonal protein labelling enables the study of antigen processing of citrullinated and carbamylated auto-antigens.

Tyrza van Leeuwen, Can Araman, Linda Pieper Pournara, Arieke S B Kampstra, Thomas Bakkum, Mikkel H S Marqvorsen, Clarissa R Nascimento, G J Mirjam Groenewold, Willemijn van der Wulp, Marcel G M Camps and 9 more

Open access · goldAbstract read
In one paragraph

Article in RSC chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
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  4. Conditional Copper-Catalyzed Azide-Alkyne Cycloaddition by Catalyst Encapsulation.Angewandte Chemie (International ed. in English) · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 5 countries.

Tyrza van LeeuwenDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.
Can AramanDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.ORCID https://orcid.org/0000-0002-6961-5607
Linda Pieper PournaraDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.ORCID https://orcid.org/0000-0002-3810-5524
Arieke S B KampstraDepartment of Rheumatology, Leiden University Medical Center P.O. Box 9600 2300 RC Leiden The Netherlands r.e.m.toes@lumc.nl.
Thomas BakkumDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.ORCID https://orcid.org/0000-0002-7993-6746
Mikkel H S MarqvorsenDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.ORCID https://orcid.org/0000-0001-8045-7796
Clarissa R NascimentoDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.
G J Mirjam GroenewoldDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.
Willemijn van der WulpDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.
Marcel G M CampsDepartment of Immunology, Leiden University Medical Center P.O. Box 9600 2300 RC Leiden The Netherlands.
George M C JanssenCenter for Proteomics and Metabolomics, Leiden University Medical Center P.O. Box 9600 2300 RC Leiden The Netherlands.
Peter A van VeelenCenter for Proteomics and Metabolomics, Leiden University Medical Center P.O. Box 9600 2300 RC Leiden The Netherlands.
Gerard J P van WestenComputational Drug Discovery, Drug Discovery and Safety, LACDR, Leiden University Leiden The Netherlands.ORCID https://orcid.org/0000-0003-0717-1817
Antonius P A JanssenDepartment of Molecular Physiology, Leiden Institute of Chemistry and the Oncode Institute, Leiden University Leiden The Netherlands.ORCID https://orcid.org/0000-0003-4203-261X
Bogdan I FloreaDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.ORCID https://orcid.org/0000-0001-7114-2266
Herman S OverkleeftDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.
Ferry A OssendorpDepartment of Immunology, Leiden University Medical Center P.O. Box 9600 2300 RC Leiden The Netherlands.
René E M ToesDepartment of Rheumatology, Leiden University Medical Center P.O. Box 9600 2300 RC Leiden The Netherlands r.e.m.toes@lumc.nl.
Sander I van KasterenDivision of Bio-organic Synthesis, Leiden Institute of Chemistry and the Institute of Chemical Immunology, Leiden University Leiden The Netherlands s.i.van.kasteren@chem.leidenuniv.nl.ORCID https://orcid.org/0000-0003-3733-818X
Leiden University · NLLeiden University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteolysis is fundamental to many biological processes. In the immune system, it underpins the activation of the adaptive immune response: degradation of antigenic material into short peptides and presentation thereof on major histocompatibility complexes, leads to activation of T-cells. This initiates the adaptive immune response against many pathogens. Studying proteolysis is difficult, as the oft-used polypeptide reporters are susceptible to proteolytic sequestration themselves. Here we present a new approach that allows the imaging of antigen proteolysis throughout the processing pathway in an unbiased manner. By incorporating bioorthogonal functionalities into the protein in place of methionines, antigens can be followed during degradation, whilst leaving reactive sidechains open to templated and non-templated post-translational modifications, such as citrullination and carbamylation. Using this approach, we followed and imaged the post-uptake fate of the commonly used antigen ovalbumin, as well as the post-translationally citrullinated and/or carbamylated auto-antigen vinculin in rheumatoid arthritis, revealing differences in antigen processing and presentation.

Identifiers

PMID34212151
PMCPMC8190914
OpenAlexW3132704479

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.