Evidence map›Paper›PMID 34210981›Full record

ArticleNPJ biofilms and microbiomes2021

A regulatory network involving Rpo, Gac and Rsm for nitrogen-fixing biofilm formation by Pseudomonas stutzeri.

Liguo Shang, Yongliang Yan, Yuhua Zhan, Xiubin Ke, Yahui Shao, Yaqun Liu, Hua Yang, Shanshan Wang, Shuling Dai, Jiasi Lu and 7 more

Open access · goldAbstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

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  19. The Regulatory Functions of σInternational journal of molecular sciences · 2021
    Review
  20. CdgC, a Cyclic-di-GMP Diguanylate Cyclase ofFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Liguo Shang *Biotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Yongliang Yan *Biotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-4297-6648
Yuhua ZhanBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-9970-0183
Xiubin KeBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Yahui ShaoBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Yaqun LiuKey Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan University, Haikou, China.
Hua YangBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Shanshan WangBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Shuling DaiBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Jiasi LuBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Ning YanBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Zhimin YangBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Wei LuBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China.
Zhu LiuKey Laboratory of Tropical Biological Resources of Ministry of Education, School of Life and Pharmaceutical Sciences, Hainan University, Haikou, China.
Shanchun ChenCitrus Research Institute, Southwest University/Chinese Academy of Agricultural Sciences, Chongqing, China.
Claudine ElmerichInstitut Pasteur, Paris, France.
Min LinBiotechnology Research Institute/Key Laboratory of Agricultural Genomics (MOA), Chinese Academy of Agricultural Sciences, Beijing, China. linmin@caas.cn.ORCID http://orcid.org/0000-0001-5119-8078
Chinese Academy of Agricultural Sciences · CNHainan University · CNSouthwest University · CNGuangxi University of Chinese Medicine · CNInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biofilm and nitrogen fixation are two competitive strategies used by many plant-associated bacteria; however, the mechanisms underlying the formation of nitrogen-fixing biofilms remain largely unknown. Here, we examined the roles of multiple signalling systems in the regulation of biofilm formation by root-associated diazotrophic P. stutzeri A1501. Physiological analysis, construction of mutant strains and microscale thermophoresis experiments showed that RpoN is a regulatory hub coupling nitrogen fixation and biofilm formation by directly activating the transcription of pslA, a major gene involved in the synthesis of the Psl exopolysaccharide component of the biofilm matrix and nifA, the transcriptional activator of nif gene expression. Genetic complementation studies and determination of the copy number of transcripts by droplet digital PCR confirmed that the regulatory ncRNA RsmZ serves as a signal amplifier to trigger biofilm formation by sequestering the translational repressor protein RsmA away from pslA and sadC mRNAs, the latter of which encodes a diguanylate cyclase that synthesises c-di-GMP. Moreover, RpoS exerts a braking effect on biofilm formation by transcriptionally downregulating RsmZ expression, while RpoS expression is repressed posttranscriptionally by RsmA. These findings provide mechanistic insights into how the Rpo/Gac/Rsm regulatory networks fine-tune nitrogen-fixing biofilm formation in response to the availability of nutrients.

Indexed as

Gene Expression Regulation, BacterialGene Regulatory NetworksNitrogen FixationBacterial ProteinsBiofilmsGene OrderNitrogenasePseudomonas stutzeriRepetitive Sequences, Nucleic AcidTranscriptional ActivationBacterial ProteinsNitrogenase

Identifiers

PMID34210981
PMCPMC8249394
OpenAlexW3173599404

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.