Evidence map›Paper›PMID 34210851›Full record

ArticleScience (New York, N.Y.)2021

An engineered protein-phosphorylation toggle network with implications for endogenous network discovery.

Deepak Mishra, Tristan Bepler, Brian Teague, Bonnie Berger, Jim Broach, Ron Weiss

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Perspectives on Synthetic Protein Circuits in Mammalian Cells.Current opinion in biomedical engineering · 2024
    Article
  6. Review
  7. Review
  8. Engineering synthetic phosphorylation signaling networks in human cells.bioRxiv : the preprint server for biology · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Advances in the Computational Design of Small-Molecule-Controlled Protein-Based Circuits for Synthetic Biology.Proceedings of the IEEE. Institute of Electrical and Electronics Engineers · 2022
    Article
  13. Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Deepak MishraDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-2682-9699
Tristan BeplerComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-5595-9954
Brian TeagueDepartment of Biology, University of Wisconsin, Stout, WI, USA.ORCID 0000-0002-9833-2817
Bonnie BergerComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-2724-7228
Jim BroachDepartment of Biochemistry and Molecular Biology, Penn State College of Medicine, Hershey, PA, USA.ORCID 0000-0003-1197-0312
Ron WeissDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. rweiss@mit.edu.ORCID 0000-0003-0396-2443
Massachusetts Institute of Technology · USNew York Structural Biology Center · USPenn State Milton S. Hershey Medical Center · USUniversity of Wisconsin–Stout · US

Funding

MIT Center for Integrative Synthetic BiologyP50GM098792 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WEISS, RON · 2013 to 2017
$11.0M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Privacy-preserving genomic medicine at scaleR01HG010959 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BERGER, BONNIE · 2020 to 2023
$2.6M
NHGRI NIH HHS R01 HG010959NIGMS NIH HHS P50 GM098792NIGMS NIH HHS T32 GM087237
6 · The paper itself

Abstract

Synthetic biological networks comprising fast, reversible reactions could enable engineering of new cellular behaviors that are not possible with slower regulation. Here, we created a bistable toggle switch in

Indexed as

BioengineeringProtein Interaction MapsMitogen-Activated Protein KinasesPhosphorylationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsHOG1 protein, S cerevisiaeMitogen-Activated Protein KinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID34210851
PMCPMC11203391
OpenAlexW3174242765

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.