Evidence map›Paper›PMID 34210682›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2021

Network Analysis Reveals Synergistic Genetic Dependencies for Rational Combination Therapy in Philadelphia Chromosome-Like Acute Lymphoblastic Leukemia.

Yang-Yang Ding, Hannah Kim, Kellyn Madden, Joseph P Loftus, Gregory M Chen, David Hottman Allen, Ruitao Zhang, Jason Xu, Chia-Hui Chen, Yuxuan Hu and 2 more

Open access · hybridAbstract readComment
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

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  11. Network analytics for drug repurposing in COVID-19.Briefings in bioinformatics · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Yang-Yang DingCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.ORCID 0000-0003-1588-2571
Hannah KimInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, Pennsylvania.
Kellyn MaddenCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Joseph P LoftusCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Gregory M ChenGraduate Group in Genomics and Computational Biology, University of Pennsylvania, Philadelphia, Pennsylvania.
David Hottman AllenCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Ruitao ZhangCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Jason XuGraduate Group in Genomics and Computational Biology, University of Pennsylvania, Philadelphia, Pennsylvania.
Chia-Hui ChenCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Yuxuan HuSchool of Computer Science and Technology, Xidian University, Xi'an, Shaanxi, China.ORCID 0000-0002-8830-6893
Sarah K Tasian *Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. tank1@chop.edu tasians@chop.edu.
Kai Tan *Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania. tank1@chop.edu tasians@chop.edu.ORCID 0000-0002-9104-5567
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · USTemple University · USXidian University · CN

Funding

Physician Scientist Training in Clinical OncologyK12CA076931 · NCI · UNIVERSITY OF PENNSYLVANIA · PI STEPHEN Patrick HUNGER, LYNN M. SCHUCHTER · 1997 to 2026
$16.5M
T32 Institutional Pediatric ResearchT32HD043021 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI Joseph W. St. Geme · 2002 to 2026
$6.4M
Multispecific targeting incorporating cytokine receptor pathways in high risk pediatric acute leukemias to improve durability of adoptive cell therapy-induced remissionsU01CA232486 · NCI · UNIVERSITY OF COLORADO DENVER · PI FRY, TERRY J., TASIAN, SARAH KATHLEEN · 2018 to 2018
$4.0M
Towards rational design of combination therapeutic targetsU01CA243072 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI TAN, KAI, TASIAN, SARAH KATHLEEN · 2020 to 2024
$2.6M
PI3K Pathway Inhibition for Philadelphia-Like Acute Lymphoblastic LeukemiaK08CA184418 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI TASIAN, SARAH KATHLEEN · 2014 to 2018
$848k
NCI NIH HHS K08 CA184418NCI NIH HHS K12 CA076931NCI NIH HHS U01 CA232486NCI NIH HHS U01 CA243072NICHD NIH HHS T32 HD043021
6 · The paper itself

Abstract

purposeSystems biology approaches can identify critical targets in complex cancer signaling networks to inform new therapy combinations that may overcome conventional treatment resistance. EXPERIMENTAL

designWe performed integrated analysis of 1,046 childhood B-ALL cases and developed a data-driven network controllability-based approach to identify synergistic key regulator targets in Philadelphia chromosome-like B-acute lymphoblastic leukemia (Ph-like B-ALL), a common high-risk leukemia subtype associated with hyperactive signal transduction and chemoresistance.

resultsWe identified 14 dysregulated network nodes in Ph-like ALL involved in aberrant JAK/STAT, Ras/MAPK, and apoptosis pathways and other critical processes. Genetic cotargeting of the synergistic key regulator pair

conclusionsOur study represents a powerful conceptual framework for combinatorial drug discovery based on systematic interrogation of synergistic vulnerability pathways with pharmacologic inhibitor validation in preclinical human leukemia models.

Indexed as

Antineoplastic AgentsPrecursor Cell Lymphoblastic Leukemia-LymphomaChildDasatinibHumansPhiladelphia ChromosomeProtein Kinase InhibitorsAntineoplastic AgentsDasatinibProtein Kinase Inhibitors

Identifiers

PMID34210682
PMCPMC8448976
OpenAlexW3176561045

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.