Evidence map›Paper›PMID 34210325›Full record

ArticleVirology journal2021

Persistence of SARS-CoV-2 RNA in the nasopharyngeal, blood, urine, and stool samples of patients with COVID-19: a hospital-based longitudinal study.

Farahnaz Joukar, Tofigh Yaghubi Kalurazi, Mahmoud Khoshsorour, Sonbol Taramian, Lida Mahfoozi, Heydar Ali Balou, Alireza Jafarinezhad, Aydin Pourkazemi, Ezat Hesni, Mehrnaz Asgharnezhad and 5 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Farahnaz JoukarGastrointestinal and Liver Diseases Research Center, GI Cancer Screening and Prevention Research Center and Caspian Digestive Diseases Research Center, Guilan University of Medical Sciences, Razi Hospital, Sardar-Jangle Ave, 41448-95655, Rasht, Iran.ORCID 0000-0001-8432-8879
Tofigh Yaghubi KaluraziDepartment of Health, Nutrition and Infectious Diseases, School of Medicine Razi Hospital, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0002-6042-2331
Mahmoud KhoshsorourGastrointestinal and Liver Diseases Research Center, Guilan University of Medical Sciences, Rasht, Iran.
Sonbol TaramianDepartment of Health, Nutrition and Infectious Diseases, School of Medicine Razi Hospital, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0002-5820-022X
Lida MahfooziDepartment of Health, Nutrition and Infectious Diseases, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0002-1569-4346
Heydar Ali BalouDepartment of Internal Medicine, School of Medicine, Gastrointestinal and Liver Disease Research Center, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0003-2767-370X
Alireza JafarinezhadDepartment of Internal Medicine, School of Medicine, Razi Hospital, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0003-2417-0074
Aydin PourkazemiDepartment of Health, Nutrition and Infectious Diseases, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0002-6929-1534
Ezat HesniDepartment of Health, Nutrition and Infectious Diseases, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0003-4420-1843
Mehrnaz AsgharnezhadGI Cancer Screening and Prevention Research Center, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0002-0409-3852
Mohammad ShenagariDepartment of Microbiology, School of Medicine, Gastrointestinal and Liver Disease Research Center, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0003-4221-8748
Issa JahanzadPars Hospital, Rasht, Iran.
Mohammadreza NaghipourGastrointestinal and Liver Diseases Research Center, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0002-9142-1147
Saman MaroufizadehDepartment of Biostatistics, School of Nursing and Midwifery, Guilan University of Medical Sciences, Rasht, Iran.ORCID 0000-0001-5794-3876
Fariborz Mansour-GhanaeiGastrointestinal and Liver Diseases Research Center, GI Cancer Screening and Prevention Research Center and Caspian Digestive Diseases Research Center, Guilan University of Medical Sciences, Razi Hospital, Sardar-Jangle Ave, 41448-95655, Rasht, Iran. fmansourghanaei@gmail.com.ORCID 0000-0002-9197-0787
Guilan University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe persistence of severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) RNA in the body fluids of patients with the novel coronavirus disease 2019 (COVID-19) may increase the potential risk of viral transmission. There is still uncertainty on whether the recommended quarantine duration is sufficient to reduce the risk of transmission. This study aimed to investigate the persistence of SARS-CoV-2 RNA in the nasopharyngeal, blood, urine, and stool samples of patients with COVID-19.

methodsIn this hospital-based longitudinal study, 100 confirmed cases of COVID-19 were recruited between March 2020 and August 2020 in Guilan Province, north of Iran. Nasopharyngeal, blood, urine, and stool samples were obtained from each participant at the time of hospital admission, upon discharge, 1 week after discharge, and every 2 weeks until all samples were negative for SARS-CoV-2 RNA by reverse transcription-polymerase chain reaction (RT-PCR) assay. A survival analysis was also performed to identify the duration of viral persistence.

resultsThe median duration of viral RNA persistence in the nasopharyngeal samples was 8 days from the first positive RT-PCR result upon admission (95% CI 6.91-9.09); the maximum duration of viral shedding was 25 days from admission. Positive blood, urine, and stool RT-PCR results were detected in 24%, 7%, and 6% of the patients, respectively. The median duration of viral persistence in the blood, urine, and stool samples was 7 days (95% CI 6.07-7.93), 6 days (95% CI 4.16-8.41), and 13 days (95% CI 6.96-19.4), respectively. Also, the maximum duration of viral persistence in the blood, urine, and stool samples was 17, 11, and 42 days from admission, respectively.

conclusionAccording to the present results, immediately after the hospitalized patients were discharged, no evidence of viral genetic materials was found. Therefore, appropriate treatments were selected for the patients at this hospital. However, we recommend further investigations on a larger sample size in multi-center and prospective randomized controlled trials (RCTs) to evaluate the effects of different drugs on the shedding of the virus through body secretions.

Indexed as

AdultAgedAged, 80 and overCOVID-19COVID-19 Nucleic Acid TestingFecesFemaleHospitalizationHumansIranLongitudinal StudiesMaleMiddle AgedNasopharynxRNA, ViralSARS-CoV-2RNA, ViralCOVID-19PersistenceRNART-PCRSARS-CoV-2

Identifiers

PMID34210325
PMCPMC8248752
OpenAlexW3175699869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.