Evidence map›Paper›PMID 34209754›Full record

ArticleBrain sciences2021

Acoustilytix™: A Web-Based Automated Ultrasonic Vocalization Scoring Platform.

Catherine B Ashley, Ryan D Snyder, James E Shepherd, Catalina Cervantes, Nitish Mittal, Sheila Fleming, Jaxon Bailey, Maisie D Nievera, Sharmin Islam Souleimanova, Bill Nyaoga and 4 more

Abstract read
In one paragraph

Article in Brain sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Catherine B AshleyCornerstone Research Group, Miamisburg, OH 45342, USA.ORCID 0000-0002-8353-7668
Ryan D SnyderCornerstone Research Group, Miamisburg, OH 45342, USA.
James E ShepherdCornerstone Research Group, Miamisburg, OH 45342, USA.
Catalina CervantesDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.
Nitish MittalZS Associates, Empire State Building, 350 Fifth Avenue, Suite 5100, New York, NY 10118, USA.ORCID 0000-0002-4934-3157
Sheila FlemingDepartment of Pharmaceutical Sciences, Northeast Ohio Medical University, 4209 State Route 44, RGE, Rootstown, OH 44272, USA.
Jaxon BaileyDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.
Maisie D NieveraDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.
Sharmin Islam SouleimanovaDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.
Bill NyaogaDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.
Lauren LichtenfeldDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.
Alicia R ChenDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.
W Todd MaddoxCognitive Design and Statistical Consulting, LLC, Austin, TX 78746, USA.
Christine L DuvauchelleDivision of Pharmacology and Toxicology, College of Pharmacy, The University of Texas at Austin, 2409 University Avenue, Stop A1915, Austin, TX 78712, USA.

Funding

Extending WAAVES+: An animal and environment-agnostic, automated USV scoring platform for high-throughput social, behavioral, and neuropharmacological studiesR41MH121119 · NIMH · CORNERSTONE RESEARCH GROUP, INC. · PI ASHLEY, CATHERINE · 2019 to 2020
$906k
NIMH NIH HHS R41MH121119
6 · The paper itself

Abstract

Ultrasonic vocalizations (USVs) are known to reflect emotional processing, brain neurochemistry, and brain function. Collecting and processing USV data is manual, time-intensive, and costly, creating a significant bottleneck by limiting researchers' ability to employ fully effective and nuanced experimental designs and serving as a barrier to entry for other researchers. In this report, we provide a snapshot of the current development and testing of Acoustilytix™, a web-based automated USV scoring tool. Acoustilytix implements machine learning methodology in the USV detection and classification process and is recording-environment-agnostic. We summarize the user features identified as desirable by USV researchers and how these were implemented. These include the ability to easily upload USV files, output a list of detected USVs with associated parameters in csv format, and the ability to manually verify or modify an automatically detected call. With no user intervention or tuning, Acoustilytix achieves 93% sensitivity (a measure of how accurately Acoustilytix detects true calls) and 73% precision (a measure of how accurately Acoustilytix avoids false positives) in call detection across four unique recording environments and was superior to the popular DeepSqueak algorithm (sensitivity = 88%; precision = 41%). Future work will include integration and implementation of machine-learning-based call type classification prediction that will recommend a call type to the user for each detected call. Call classification accuracy is currently in the 71-79% accuracy range, which will continue to improve as more USV files are scored by expert scorers, providing more training data for the classification model. We also describe a recently developed feature of Acoustilytix that offers a fast and effective way to train hand-scorers using automated learning principles without the need for an expert hand-scorer to be present and is built upon a foundation of learning science. The key is that trainees are given practice classifying hundreds of calls with immediate corrective feedback based on an expert's USV classification. We showed that this approach is highly effective with inter-rater reliability (i.e., kappa statistics) between trainees and the expert ranging from 0.30-0.75 (average = 0.55) after only 1000-2000 calls of training. We conclude with a brief discussion of future improvements to the Acoustilytix platform.

Indexed as

addictionautomated scoringdopaminedrug developmentdrug discoverymachine learningmental healthultrasonic vocalization

Identifiers

PMID34209754
PMCPMC8301917

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.