Evidence map›Paper›PMID 34209188›Full record

ArticleInternational journal of molecular sciences2021

Structure-Based Virtual Screening Reveals Ibrutinib and Zanubrutinib as Potential Repurposed Drugs against COVID-19.

Satyavani Kaliamurthi, Gurudeeban Selvaraj, Chandrabose Selvaraj, Sanjeev Kumar Singh, Dong-Qing Wei, Gilles H Peslherbe

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
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  9. A review onExploration of targeted anti-tumor therapy · 2023
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  10. Small molecules in the treatment of COVID-19.Signal transduction and targeted therapy · 2022
    Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Radiosynthesis of [Frontiers in nuclear medicine · 2021
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Satyavani KaliamurthiCentre for Research in Molecular Modeling & Department of Chemistry and Biochemistry, Concordia University, Montreal, QC H3G 1M8, Canada.ORCID 0000-0002-3604-8810
Gurudeeban SelvarajCentre for Research in Molecular Modeling & Department of Chemistry and Biochemistry, Concordia University, Montreal, QC H3G 1M8, Canada.ORCID 0000-0002-7223-3853
Chandrabose SelvarajComputer Aided Drug Design and Molecular Modeling Lab, Department of Bioinformatics, Alagappa University, Karaikudi 630003, India.ORCID 0000-0002-8115-0486
Sanjeev Kumar SinghComputer Aided Drug Design and Molecular Modeling Lab, Department of Bioinformatics, Alagappa University, Karaikudi 630003, India.
Dong-Qing WeiThe State Key Laboratory of Microbial Metabolism, College of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.ORCID 0000-0003-4200-7502
Gilles H PeslherbeCentre for Research in Molecular Modeling & Department of Chemistry and Biochemistry, Concordia University, Montreal, QC H3G 1M8, Canada.
Concordia University · CAAlagappa University · INShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coronavirus disease (COVID)-19 is the leading global health threat to date caused by a severe acute respiratory syndrome coronavirus (SARS-CoV-2). Recent clinical trials reported that the use of Bruton's tyrosine kinase (BTK) inhibitors to treat COVID-19 patients could reduce dyspnea and hypoxia, thromboinflammation, hypercoagulability and improve oxygenation. However, the mechanism of action remains unclear. Thus, this study employs structure-based virtual screening (SBVS) to repurpose BTK inhibitors acalabrutinib, dasatinib, evobrutinib, fostamatinib, ibrutinib, inositol 1,3,4,5-tetrakisphosphate, spebrutinib, XL418 and zanubrutinib against SARS-CoV-2. Molecular docking is conducted with BTK inhibitors against structural and nonstructural proteins of SARS-CoV-2 and host targets (ACE2, TMPRSS2 and BTK). Molecular mechanics-generalized Born surface area (MM/GBSA) calculations and molecular dynamics (MD) simulations are then carried out on the selected complexes with high binding energy. Ibrutinib and zanubrutinib are found to be the most potent of the drugs screened based on the results of computational studies. Results further show that ibrutinib and zanubrutinib could exploit different mechanisms at the viral entry and replication stage and could be repurposed as potential inhibitors of SARS-CoV-2 pathogenesis.

Indexed as

Drug RepositioningMolecular Dynamics SimulationAdenineAgammaglobulinaemia Tyrosine KinaseAngiotensin-Converting Enzyme 2Binding SitesCOVID-19COVID-19 Drug TreatmentHumansMolecular Docking SimulationPiperidinesProtein Kinase InhibitorsPyrazolesPyrimidinesSARS-CoV-2Serine EndopeptidasesACE2 protein, humanAdenineAgammaglobulinaemia Tyrosine KinaseAngiotensin-Converting Enzyme 2ibrutinibPiperidinesProtein Kinase InhibitorsPyrazolesPyrimidinesSerine EndopeptidasesTMPRSS2 protein, humanViral Nonstructural ProteinszanubrutinibBTK inhibitorsCOVID-19ibrutinibMD simulationsprotein-ligand binding free energySARS-CoV-2zanubrutinib

Identifiers

PMID34209188
PMCPMC8267665
OpenAlexW3176725278

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.