Evidence map›Paper›PMID 34208758›Full record

ArticleInternational journal of molecular sciences2021

Genetic and Epigenetic Variations of HPV52 in Cervical Precancer.

Katharine J Bee, Ana Gradissimo, Zigui Chen, Ariana Harari, Mark Schiffman, Tina Raine-Bennett, Philip E Castle, Megan Clarke, Nicolas Wentzensen, Robert D Burk

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 3 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 3 syntheses or guidelines pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Epigenetic Biomarkers for Cervical Cancer Progression: A Scoping Review.International journal of molecular sciences · 2025
    Article
  5. Article
  6. Article
  7. HPV Infections-Classification, Pathogenesis, and Potential New Therapies.International journal of molecular sciences · 2024
    Review
  8. Article
  9. The Role of p16/Ki67 Dual Staining in Cervical Cancer Screening.Current issues in molecular biology · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Katharine J BeeDepartment of Pediatrics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Ana GradissimoDepartment of Pediatrics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Zigui ChenDepartment of Pediatrics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.ORCID 0000-0002-8577-1298
Ariana HarariDepartment of Pediatrics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Mark SchiffmanDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USA.
Tina Raine-BennettDivision of Research, Kaiser Permanente Northern California, Oakland, CA 94612, USA.
Philip E CastleDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USA.
Megan ClarkeDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USA.
Nicolas WentzensenDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD 20892, USA.
Robert D BurkDepartment of Pediatrics, Albert Einstein College of Medicine, Bronx, NY 10461, USA.ORCID 0000-0002-8376-8458
Albert Einstein College of Medicine · USNational Cancer Institute · USKaiser Permanente · USNational Institutes of Health · US

Funding

Bronx-Einstein Training in Teaching and Research (BETTR), an IRACDA programK12GM102779 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Dianne Cox, Johanna Patricia Daily · 2012 to 2026
$9.2M
PERSISTENT HUMAN PAPILLOMAVIRUS IN WOMEN AT RISK FOR CERVIX CANCERU01CA078527 · NCI · YESHIVA UNIVERSITY · PI BURK, ROBERT D · 2003 to 2018
$8.6M
PERSISTENT HPV IN WOMEN AT RISK FOR CERVIX CANCERR01CA078527 · NCI · YESHIVA UNIVERSITY · PI BURK, ROBERT D. · 1998 to 2002
$1.5M
Einstein Cancer Research Center P30CA013330Einstein-Montefiore Center for AIDS AI-51519NCI NIH HHS CA78527NIGMS NIH HHS K12 GM102779The Bronx Einstein Training in Teaching and Research (BETTR) GM102779
6 · The paper itself

Abstract

The goal of this study was to identify human papillomavirus (HPV) type 52 genetic and epigenetic changes associated with high-grade cervical precancer and cancer. Patients were selected from the HPV Persistence and Progression (PaP) cohort, a cervical cancer screening program at Kaiser Permanente Northern California (KPNC). We performed a nested case-control study of 89 HPV52-positive women, including 50 cases with predominantly cervical intraepithelial neoplasia grade 3 (CIN3) and 39 controls without evidence of abnormalities. We conducted methylation analyses using Illumina sequencing and viral whole genome Sanger sequencing. Of the 24 CpG sites examined, increased methylation at CpG site 5615 in HPV52 L1 region was the most significantly associated with CIN3, with a difference in median methylation of 17.9% (odds ratio (OR) = 4.8, 95% confidence interval (CI) = 1.9-11.8) and an area under the curve of 0.73 (AUC; 95% CI = 0.62-0.83). Complete genomic sequencing of HPV52 isolates revealed associations between SNPs present in sublineage C2 and a higher risk of CIN3, with ORs ranging from 2.8 to 3.3. This study identified genetic and epigenetic HPV52 variants associated with high risk for cervical precancer, improving the potential for early diagnosis of cervical neoplasia caused by HPV52.

Indexed as

Disease SusceptibilityEpigenesis, GeneticGenetic VariationAlphapapillomavirusCell Transformation, ViralCpG IslandsDNA MethylationFemaleGenome, ViralHigh-Throughput Nucleotide SequencingHumansOncogene Proteins, ViralPapillomavirus InfectionsPhylogenyUterine Cervical NeoplasmsOncogene Proteins, ViralevolutionHPV52methylationnext generation sequencingpapillomavirusphylogenyprecancer

Identifiers

PMID34208758
PMCPMC8234014
OpenAlexW3171002631

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.