Evidence map›Paper›PMID 34208525›Full record

ArticleInternational journal of molecular sciences2021

Poly(A)+ Sensing of Hybridization-Sensitive Fluorescent Oligonucleotide Probe Characterized by Fluorescence Correlation Methods.

Bjorn Paulson, Yeonhee Shin, Akimitsu Okamoto, Yeon-Mok Oh, Jun Ki Kim, Chan-Gi Pack

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 95% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Bjorn PaulsonAsan Institute for Life Science, Asan Medical Center, Seoul 05505, Korea.
Yeonhee ShinDepartment of Convergence Medicine, University of Ulsan College of Medicine, Seoul 05505, Korea.
Akimitsu OkamotoResearch Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan.ORCID 0000-0002-7418-6237
Yeon-Mok OhDepartment of Pulmonary and Critical Care Medicine, University of Ulsan College of Medicine, Seoul 05505, Korea.
Jun Ki KimAsan Institute for Life Science, Asan Medical Center, Seoul 05505, Korea.ORCID 0000-0002-0099-9681
Chan-Gi PackAsan Institute for Life Science, Asan Medical Center, Seoul 05505, Korea.ORCID 0000-0002-6578-3099
Ulsan College · KRAsan Medical Center · KRThe University of Tokyo · JP

Funding

Asan Institute for Life Sciences, Asan Medical Center 2018-306Korea Health Industry Development Institute HI18C2391National Research Foundation of Korea 2014R1A1A2058183, 2016K2A9A2A08003729, 2018R1A5A2020732, 2019R1A2C2084122, 2020R1F1A1074033, 2020H1D3A1A02081127
6 · The paper itself

Abstract

Ribonucleic acid (RNA) plays an important role in many cellular processes. Thus, visualizing and quantifying the molecular dynamics of RNA directly in living cells is essential to uncovering their role in RNA metabolism. Among the wide variety of fluorescent probes available for RNA visualization, exciton-controlled hybridization-sensitive fluorescent oligonucleotide (ECHO) probes are useful because of their low fluorescence background. In this study, we apply fluorescence correlation methods to ECHO probes targeting the poly(A) tail of mRNA. In this way, we demonstrate not only the visualization but also the quantification of the interaction between the probe and the target, as well as of the change in the fluorescence brightness and the diffusion coefficient caused by the binding. In particular, the uptake of ECHO probes to detect mRNA is demonstrated in HeLa cells. These results are expected to provide new insights that help us better understand the metabolism of intracellular mRNA.

Indexed as

Fluorescent DyesOligonucleotide ProbesPoly AHeLa CellsHumansNucleic Acid HybridizationRNA, MessengerSensitivity and SpecificitySpectrometry, FluorescenceFluorescent DyesOligonucleotide ProbesPoly ARNA, Messengerdual-color fluorescence cross-correlation spectroscopyexciton-controlled hybridization-sensitive oligonucleotide probefluorescence correlation spectroscopymRNApoly(A) tail

Identifiers

PMID34208525
PMCPMC8234900
OpenAlexW3170854543

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.