Evidence map›Paper›PMID 34207561›Full record

ArticleMicroorganisms2021

Full-Length SSU rRNA Gene Sequencing Allows Species-Level Detection of Bacteria, Archaea, and Yeasts Present in Milk.

Isabel Abellan-Schneyder, Annemarie Siebert, Katharina Hofmann, Mareike Wenning, Klaus Neuhaus

Abstract read
In one paragraph

Article in Microorganisms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Characterizing the Effect ofAnimals : an open access journal from MDPI · 2024
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Isabel Abellan-SchneyderCore Facility Microbiome, ZIEL-Institute for Food & Health, Technische Universität München, 85354 Freising, Germany.
Annemarie SiebertChair of Microbial Ecology, ZIEL-Institute for Food & Health, Technische Universität München, 85354 Freising, Germany.
Katharina HofmannChair of Microbial Ecology, ZIEL-Institute for Food & Health, Technische Universität München, 85354 Freising, Germany.
Mareike WenningChair of Microbial Ecology, ZIEL-Institute for Food & Health, Technische Universität München, 85354 Freising, Germany.ORCID 0000-0002-7828-0458
Klaus NeuhausCore Facility Microbiome, ZIEL-Institute for Food & Health, Technische Universität München, 85354 Freising, Germany.ORCID 0000-0002-6020-2814

Funding

Federal Ministry of Food and Agriculture (BMEL) 281A105616IGF Project of the FEI via AiF AiF 20027NResearch Foundation of Dairy Science at the Technical University of Munich (VFMF) n/a (grant for a scientistZIEL-Institute for Food & Health at the Technical University of Munich n/a (grant for a doctorate position)
6 · The paper itself

Abstract

Full-length SSU rRNA gene sequencing allows species-level identification of the microorganisms present in milk samples. Here, we used bulk-tank raw milk samples of two German dairies and detected, using this method, a great diversity of bacteria, archaea, and yeasts within the samples. Moreover, the species-level classification was improved in comparison to short amplicon sequencing. Therefore, we anticipate that this approach might be useful for the detection of possible mastitis-causing species, as well as for the control of spoilage-associated microorganisms. In a proof of concept, we showed that we were able to identify several putative mastitis-causing or mastitis-associated species such as

Indexed as

full-length sequencingLoopSeqmilk microbiotaSSU rRNA gene sequencing

Identifiers

PMID34207561
PMCPMC8229006

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.