Evidence map›Paper›PMID 34207555›Full record

Trial reportInternational journal of molecular sciences2021

Integrative Analyses of Circulating Small RNAs and Kidney Graft Transcriptome in Transplant Glomerulopathy.

Canan Kuscu, Manjari Kiran, Akram Mohammed, Cem Kuscu, Sarthak Satpathy, Aaron Wolen, Elissa Bardhi, Amandeep Bajwa, James D Eason, Daniel Maluf and 2 more

Abstract readClinical Trial
In one paragraph

Trial report in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Canan KuscuTransplant Research Institute, James D. Eason Transplant Institute, Department of Surgery, School of Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Manjari KiranDepartment of Systems and Computational Biology, School of Life Sciences, University of Hyderabad, Hyderabad 500046, India.ORCID 0000-0003-0153-7072
Akram MohammedCenter for Biomedical Informatics, University of Tennessee Health Science Center, Memphis, TN 38163, USA.ORCID 0000-0001-8093-8637
Cem KuscuTransplant Research Institute, James D. Eason Transplant Institute, Department of Surgery, School of Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA.ORCID 0000-0001-7154-6762
Sarthak SatpathyDepartment of Systems and Computational Biology, School of Life Sciences, University of Hyderabad, Hyderabad 500046, India.
Aaron WolenTransplant Research Institute, James D. Eason Transplant Institute, Department of Surgery, School of Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Elissa BardhiDepartment of Surgery, School of Medicine, University of Maryland, Baltimore, MD 21201, USA.
Amandeep BajwaTransplant Research Institute, James D. Eason Transplant Institute, Department of Surgery, School of Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA.ORCID 0000-0003-0517-8871
James D EasonTransplant Research Institute, James D. Eason Transplant Institute, Department of Surgery, School of Medicine, University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Daniel MalufDepartment of Surgery, School of Medicine, University of Maryland, Baltimore, MD 21201, USA.
Valeria MasDepartment of Surgery, School of Medicine, University of Maryland, Baltimore, MD 21201, USA.
Enver AkalinMontefiore Medical Center, Abdominal Transplant Program, Albert Einstein College of Medicine, Bronx, NY 10467, USA.

Funding

Assessment of Donor Quality for Improving Kidney Transplant OutcomesR01DK109581 · NIDDK · UNIVERSITY OF VIRGINIA · PI Kellie J. Archer, Valeria Raquel Mas · 2017 to 2026
$4.0M
Dissecting the role of dynamic epigenome prompting pathways leading to kidney allograft fibrosisR01DK122682 · NIDDK · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI MAS, VALERIA RAQUEL · 2019 to 2023
$3.6M
Molecular pathways leading to chronic graft dysfunctionR01DK080074 · NIDDK · VIRGINIA COMMONWEALTH UNIVERSITY · PI MAS, VALERIA RAQUEL · 2008 to 2012
$1.8M
Mitochondrial Therapy for Kidney InjuryR01DK117183 · NIDDK · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI BAJWA, AMANDEEP · 2018 to 2022
$1.7M
NIDDK NIH HHS R01 DK080074NIDDK NIH HHS R01 DK109581NIDDK NIH HHS R01DK109581, R01DK122682NIDDK NIH HHS R01 DK117183NIDDK NIH HHS R01 DK122682
6 · The paper itself

Abstract

Transplant glomerulopathy develops through multiple mechanisms, including donor-specific antibodies, T cells and innate immunity. This study investigates circulating small RNA profiles in serum samples of kidney transplant recipients with biopsy-proven transplant glomerulopathy. Among total small RNA population, miRNAs were the most abundant species in the serum of kidney transplant patients. In addition, fragments arising from mature tRNA and rRNA were detected. Most of the tRNA fragments were generated from 5' ends of mature tRNA and mainly from two parental tRNAs: tRNA-Gly and tRNA-Glu. Moreover, transplant patients with transplant glomerulopathy displayed a novel tRNA fragments signature. Gene expression analysis from allograft tissues demonstrated changes in canonical pathways related to immune activation such as iCos-iCosL signaling pathway in T helper cells, Th1 and Th2 activation pathway, and dendritic cell maturation. mRNA targets of down-regulated miRNAs such as miR-1224-5p, miR-4508, miR-320, miR-378a from serum were globally upregulated in tissue. Integration of serum miRNA profiles with tissue gene expression showed that changes in serum miRNAs support the role of T-cell mediated mechanisms in ongoing allograft injury.

Indexed as

Kidney TransplantationAdultAgedCell-Free Nucleic AcidsFemaleGraft RejectionHumansKidney DiseasesMaleMicroRNAsMiddle AgedRNA, Transfer, GlyTh1 CellsTh2 CellsCell-Free Nucleic AcidsMicroRNAsRNA, Transfer, Glycirculating small non-coding RNAsmiRNAsnon-invasive biomarkerRNA-seqtransplant glomerulopathytRNA fragments

Identifiers

PMID34207555
PMCPMC8226568

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.