Evidence map›Paper›PMID 34206594›Full record

ReviewInternational journal of molecular sciences2021

How Single-Molecule Localization Microscopy Expanded Our Mechanistic Understanding of RNA Polymerase II Transcription.

Peter Hoboth, Ondřej Šebesta, Pavel Hozák

Open access · goldAbstract readReview
In one paragraph

Review in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Molecular Mechanisms Driven by MT4-MMP in Cancer Progression.International journal of molecular sciences · 2023
    Review
  5. Novel Effect ofMolecules (Basel, Switzerland) · 2023
    Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Peter HobothDepartment of Biology of the Cell Nucleus, Institute of Molecular Genetics of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.ORCID 0000-0002-8781-4984
Ondřej ŠebestaFaculty of Science, Charles University, Albertov 6, 128 00 Prague, Czech Republic.
Pavel HozákDepartment of Biology of the Cell Nucleus, Institute of Molecular Genetics of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic.ORCID 0000-0003-1901-1394
Czech Academy of Sciences · CZCharles University · CZ

Funding

Akademie Věd České Republiky JSPS-20-06European Regional Development Fund CZ.02.1.01/0.0/0.0/16_013/0001775European Regional Development Fund CZ.1.05/4.1.00/16.0347European Regional Development Fund CZ.2.16/3.1.00/21515Grantová Agentura České Republiky 18-19714SGrantová Agentura České Republiky 19-05608SInstitutional Research Concept of the Institute of Molecular Genetics RVO: 68378050Ministry of Education, Youth and Science Action 15214 EuroCellnetMinistry of Education, Youth and Science COST Inter-excellence internship LTC19048Ministry of Education, Youth and Science CZ.02.1.01/0.0/0.0/18_046/0016045Ministry of Education, Youth and Science LM2018129Ministry of Education, Youth and Science LTC20024National Program of Sustainability NPUI LO1220 and LO1419 (RVO: 68378050-KAV-NPUI)
6 · The paper itself

Abstract

Classical models of gene expression were built using genetics and biochemistry. Although these approaches are powerful, they have very limited consideration of the spatial and temporal organization of gene expression. Although the spatial organization and dynamics of RNA polymerase II (RNAPII) transcription machinery have fundamental functional consequences for gene expression, its detailed studies have been abrogated by the limits of classical light microscopy for a long time. The advent of super-resolution microscopy (SRM) techniques allowed for the visualization of the RNAPII transcription machinery with nanometer resolution and millisecond precision. In this review, we summarize the recent methodological advances in SRM, focus on its application for studies of the nanoscale organization in space and time of RNAPII transcription, and discuss its consequences for the mechanistic understanding of gene expression.

Indexed as

Gene Expression RegulationMicroscopy, FluorescenceTranscription, GeneticAnimalsHumansProtein BindingRNA Polymerase IISingle Molecule ImagingTranscription FactorsRNA Polymerase IITranscription Factorscell nucleusgene expressionphotoactivationstimulated emission depletionstochastic optical reconstructionstructured illuminationsuper-resolution microscopytranscription factorstranscription foci

Identifiers

PMID34206594
PMCPMC8269275
OpenAlexW3171807992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.