Evidence map›Paper›PMID 34206520›Full record

ArticleViruses2021

Comprehensive Profiling of Mutations to Influenza Virus PB2 That Confer Resistance to the Cap-Binding Inhibitor Pimodivir.

Y Q Shirleen Soh, Keara D Malone, Rachel T Eguia, Jesse D Bloom

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Review
  6. Mutational fitness landscape and drug resistance.Current opinion in structural biology · 2023
    Review
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Y Q Shirleen SohFred Hutchinson Cancer Research Center, Basic Sciences Division, Seattle, WA 98109, USA.
Keara D MaloneFred Hutchinson Cancer Research Center, Basic Sciences Division, Seattle, WA 98109, USA.
Rachel T EguiaFred Hutchinson Cancer Research Center, Basic Sciences Division, Seattle, WA 98109, USA.
Jesse D BloomFred Hutchinson Cancer Research Center, Basic Sciences Division, Seattle, WA 98109, USA.ORCID 0000-0003-1267-3408
Fred Hutch Cancer Center · USHoward Hughes Medical Institute · US

Funding

High-throughput experiments to guide influenza vaccine strain selectionR01AI127893 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BLOOM, JESSE D · 2016 to 2020
$2.1M
Prospectively characterizing the functional and antigenic effects of mutations to viral entry proteinsR01AI141707 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BLOOM, JESSE D · 2018 to 2022
$2.1M
Howard Hughes Medical InstituteNational Institute of Allergy and Infectious Diseases R01AI127893NIAID NIH HHS R01 AI127893NIAID NIH HHS R01 AI141707
6 · The paper itself

Abstract

Antivirals are used not only in the current treatment of influenza but are also stockpiled as a first line of defense against novel influenza strains for which vaccines have yet to be developed. Identifying drug resistance mutations can guide the clinical deployment of the antiviral and can additionally define the mechanisms of drug action and drug resistance. Pimodivir is a first-in-class inhibitor of the polymerase basic protein 2 (PB2) subunit of the influenza A virus polymerase complex. A number of resistance mutations have previously been identified in treated patients or cell culture. Here, we generate a complete map of the effect of all single-amino-acid mutations to an avian PB2 on resistance to pimodivir. We identified both known and novel resistance mutations not only in the previously implicated cap-binding and mid-link domains, but also in the N-terminal domain. Our complete map of pimodivir resistance thus enables the evaluation of whether new viral strains contain mutations that will confer pimodivir resistance.

Indexed as

MutationA549 CellsAnimalsAntiviral AgentsBirdsDrug Resistance, ViralGenetic VariationHumansInfluenza A virusInfluenza in BirdsPyridinesPyrimidinesPyrrolesRNA Cap-Binding ProteinsViral ProteinsAntiviral AgentsPB2 protein, influenza viruspimodivirPyridinesPyrimidinesPyrrolesRNA Cap-Binding ProteinsViral Proteinsdeep mutational scanningdrug resistanceinfluenzaPB2pimodivirpolymerase

Identifiers

PMID34206520
PMCPMC8310130
OpenAlexW3161171596

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.