Evidence map›Paper›PMID 34204944›Full record

ReviewBiomolecules2021

Review of Methodological Approaches to Human Milk Small Extracellular Vesicle Proteomics.

Brett Vahkal, Jamie Kraft, Emanuela Ferretti, Minyoung Chung, Jean-François Beaulieu, Illimar Altosaar

Open access · goldAbstract readReview
In one paragraph

Review in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Brett VahkalDepartment of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
Jamie KraftDepartment of Molecular and Clinical Medicine, University of Gothenburg, SU Sahlgrenska, 41345 Gothenburg, Sweden.
Emanuela FerrettiDivision of Neonatology, Department of Pediatrics, Children's Hospital of Eastern Ontario, Ottawa, ON K1H 8L1, Canada.ORCID 0000-0003-1741-4333
Minyoung ChungDepartment of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada.
Jean-François BeaulieuDepartment of Immunology and Cell Biology, Université de Sherbrooke, Sherbrooke, QC J1E 4K8, Canada.ORCID 0000-0002-8977-3629
Illimar AltosaarDepartment of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, ON K1H 8L1, Canada.ORCID 0000-0001-5018-036X
University of Ottawa · CAChildren's Hospital of Eastern Ontario · CAUniversité de Sherbrooke · CAUniversity of Gothenburg · SEUniversity of Toronto · CA

Funding

CIHR PJT-162423
6 · The paper itself

Abstract

Proteomics can map extracellular vesicles (EVs), including exosomes, across disease states between organisms and cell types. Due to the diverse origin and cargo of EVs, tailoring methodological and analytical techniques can support the reproducibility of results. Proteomics scans are sensitive to in-sample contaminants, which can be retained during EV isolation procedures. Contaminants can also arise from the biological origin of exosomes, such as the lipid-rich environment in human milk. Human milk (HM) EVs and exosomes are emerging as a research interest in health and disease, though the experimental characterization and functional assays remain varied. Past studies of HM EV proteomes have used data-dependent acquisition methods for protein detection, however, improvements in data independent acquisition could allow for previously undetected EV proteins to be identified by mass spectrometry. Depending on the research question, only a specific population of proteins can be compared and measured using isotope and other labelling techniques. In this review, we summarize published HM EV proteomics protocols and suggest a methodological workflow with the end-goal of effective and reproducible analysis of human milk EV proteomes.

Indexed as

Computational BiologyExosomesExtracellular VesiclesHumansMass SpectrometryMilk, HumanMilk ProteinsProteomicsReproducibility of ResultsUltracentrifugationMilk Proteinsexosomesextracellular vesicleshuman milkmass spectrometryproteomics

Identifiers

PMID34204944
PMCPMC8228857
OpenAlexW3166742236

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.