Evidence map›Paper›PMID 34203873›Full record

Trial reportBiomolecules2021

Comprehensive Evaluation of PAXgene Fixation on Oral Cancer Tissues Using Routine Histology, Immunohistochemistry, and FTIR Microspectroscopy.

Pooja Lahiri, Suranjana Mukherjee, Biswajoy Ghosh, Debnath Das, Basudev Lahiri, Shailendra Kumar Varshney, Mousumi Pal, Ranjan Rashmi Paul, Jyotirmoy Chatterjee

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Pooja LahiriSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.ORCID 0000-0002-6305-9451
Suranjana MukherjeeSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.ORCID 0000-0001-5020-1677
Biswajoy GhoshSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.ORCID 0000-0003-1309-1661
Debnath DasSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
Basudev LahiriDepartment of Electronics and Electrical Communication Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.ORCID 0000-0002-5700-1624
Shailendra Kumar VarshneyDepartment of Electronics and Electrical Communication Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
Mousumi PalGuru Nanak Institute of Dental Sciences and Research (GNIDSR), Kolkata 700114, India.
Ranjan Rashmi PaulDepartment of Oral & Dental Sciences, JIS University, Kolkata 700109, India.
Jyotirmoy ChatterjeeSchool of Medical Science and Technology, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
Indian Institute of Technology Kharagpur · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The choice of tissue fixation is critical for preserving the morphology and biochemical information of tissues. Fragile oral tissues with lower tensile strength are challenging to process for histological applications as they are prone to processing damage, such as tissue tear, wrinkling, and tissue fall-off from slides. This leads to loss of morphological information and unnecessary delay in experimentation. In this study, we have characterized the new PAXgene tissue fixation system on oral buccal mucosal tissue of cancerous and normal pathology for routine histological and immunohistochemical applications. We aimed to minimize the processing damage of tissues and improve the quality of histological experiments. We also examined the preservation of biomolecules by PAXgene fixation using FTIR microspectroscopy. Our results demonstrate that the PAXgene-fixed tissues showed significantly less tissue fall-off from slides. Hematoxylin and Eosin staining showed comparable morphology between formalin-fixed and PAXgene-fixed tissues. Good quality and slightly superior immunostaining for cancer-associated proteins p53 and CK5/6 were observed in PAXgene-fixed tissues without antigen retrieval than formalin-fixed tissues. Further, FTIR measurements revealed superior preservation of glycogen, fatty acids, and amide III protein secondary structures in PAXgene-fixed tissues. Overall, we present the first comprehensive evaluation of the PAXgene tissue fixation system in oral tissues. This study concludes that the PAXgene tissue fixation system can be applied to oral tissues to perform diagnostic molecular pathology experiments without compromising the quality of the morphology or biochemistry of biomolecules.

Indexed as

Mouth NeoplasmsNeoplasm ProteinsSquamous Cell Carcinoma of Head and NeckTissue FixationFemaleHumansImmunohistochemistryMaleSpectroscopy, Fourier Transform InfraredNeoplasm Proteinsformalin fixationFTIRimmunohistochemistryoral epithelial dysplasiaoral squamous cell carcinomaPAXgene tissue fixationspectral histology

Identifiers

PMID34203873
PMCPMC8232633
OpenAlexW3173058909

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.