Evidence map›Paper›PMID 34200988›Full record

ArticleCells2021

PBRM1 Cooperates with YTHDF2 to Control HIF-1α Protein Translation.

Alena Shmakova, Mark Frost, Michael Batie, Niall S Kenneth, Sonia Rocha

Open access · goldAbstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. N6-methyladenosine modification of hypoxia-inducible factor-1α regulatesWorld journal of gastrointestinal oncology · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. The Role of NCells · 2022
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Alena ShmakovaCentre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee DD1 5EH, UK.
Mark FrostInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Michael BatieInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.ORCID 0000-0002-7508-6641
Niall S KennethInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.
Sonia RochaInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK.ORCID 0000-0002-2413-4981
University of Liverpool · GBUniversity of Dundee · GB

Funding

Cancer Research UK 12918Cancer Research UK C99667/A12918Medical Research Council MR/K015931/1Wellcome Trust 100152/Z/12/ZWellcome Trust 206293/Z/17/Z
6 · The paper itself

Abstract

PBRM1, a component of the chromatin remodeller SWI/SNF, is often deleted or mutated in human cancers, most prominently in renal cancers. Core components of the SWI/SNF complex have been shown to be important for the cellular response to hypoxia. Here, we investigated how PBRM1 controls HIF-1α activity. We found that PBRM1 is required for HIF-1α transcriptional activity and protein levels. Mechanistically, PBRM1 is important for HIF-1α mRNA translation, as absence of PBRM1 results in reduced actively translating HIF-1α mRNA. Interestingly, we found that PBRM1, but not BRG1, interacts with the m6A reader protein YTHDF2. HIF-1α mRNA is m6A-modified, bound by PBRM1 and YTHDF2. PBRM1 is necessary for YTHDF2 binding to HIF-1α mRNA and reduction of YTHDF2 results in reduced HIF-1α protein expression in cells. Our results identify a SWI/SNF-independent function for PBRM1, interacting with HIF-1α mRNA and the epitranscriptome machinery. Furthermore, our results suggest that the epitranscriptome-associated proteins play a role in the control of hypoxia signalling pathways.

Indexed as

Cell HypoxiaA549 CellsDNA-Binding ProteinsHeLa CellsHumansHypoxia-Inducible Factor 1, alpha SubunitProtein BiosynthesisRNA-Binding ProteinsSignal TransductionTranscription FactorsDNA-Binding ProteinsHIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitPBRM1 protein, humanRNA-Binding ProteinsTranscription FactorsYTHDF2 protein, humanHIF-1hypoxiam6APBRM1SWI/SNFYTHDF2

Identifiers

PMID34200988
PMCPMC8228889
OpenAlexW3154666267

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.