Evidence map›Paper›PMID 34200880›Full record

ArticleCells2021

Single-Cell RNA-Seq Reveals Transcriptomic Heterogeneity and Post-Traumatic Osteoarthritis-Associated Early Molecular Changes in Mouse Articular Chondrocytes.

Aimy Sebastian, Jillian L McCool, Nicholas R Hum, Deepa K Murugesh, Stephen P Wilson, Blaine A Christiansen, Gabriela G Loots

Open access · goldAbstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 108 citations in OpenAlex.

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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Aimy SebastianLawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA 94550, USA.ORCID 0000-0002-7822-7040
Jillian L McCoolLawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA 94550, USA.ORCID 0000-0002-5317-8764
Nicholas R HumLawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA 94550, USA.ORCID 0000-0003-1605-3193
Deepa K MurugeshLawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA 94550, USA.
Stephen P WilsonLawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA 94550, USA.ORCID 0000-0002-0125-1149
Blaine A ChristiansenDepartment of Orthopaedic Surgery, University of California Davis Health, Sacramento, CA 95817, USA.ORCID 0000-0002-0105-6458
Gabriela G LootsLawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA 94550, USA.ORCID 0000-0001-9546-5561
Lawrence Livermore National Laboratory · USUniversity of California, Davis · US

Funding

Lawrence Livermore National Laboratory LDRD-20-LW-002U.S. Department of Defense PR180268U.S. Department of Defense PR192271
6 · The paper itself

Abstract

Articular cartilage is a connective tissue lining the surfaces of synovial joints. When the cartilage severely wears down, it leads to osteoarthritis (OA), a debilitating disease that affects millions of people globally. The articular cartilage is composed of a dense extracellular matrix (ECM) with a sparse distribution of chondrocytes with varying morphology and potentially different functions. Elucidating the molecular and functional profiles of various chondrocyte subtypes and understanding the interplay between these chondrocyte subtypes and other cell types in the joint will greatly expand our understanding of joint biology and OA pathology. Although recent advances in high-throughput OMICS technologies have enabled molecular-level characterization of tissues and organs at an unprecedented resolution, thorough molecular profiling of articular chondrocytes has not yet been undertaken, which may be in part due to the technical difficulties in isolating chondrocytes from dense cartilage ECM. In this study, we profiled articular cartilage from healthy and injured mouse knee joints at a single-cell resolution and identified nine chondrocyte subtypes with distinct molecular profiles and injury-induced early molecular changes in these chondrocytes. We also compared mouse chondrocyte subpopulations to human chondrocytes and evaluated the extent of molecular similarity between mice and humans. This work expands our view of chondrocyte heterogeneity and rapid molecular changes in chondrocyte populations in response to joint trauma and highlights potential mechanisms that trigger cartilage degeneration.

Indexed as

AnimalsCartilage, ArticularChondrocytesHumansKnee InjuriesKnee JointMaleMiceMice, Inbred C57BLOsteoarthritis, KneeRNA-SeqSingle-Cell AnalysisTranscriptomecartilagechondrocyte heterogeneitygene expressionknee injuryosteoarthritisPTOAscRNA-seq

Identifiers

PMID34200880
PMCPMC8230441
OpenAlexW3171420350

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.