Evidence map›Paper›PMID 34200153›Full record

ArticleJournal of fungi (Basel, Switzerland)2021

A Comprehensive Phylogenetic and Bioinformatics Survey of Lectins in the Fungal Kingdom.

Annie Lebreton, François Bonnardel, Yu-Cheng Dai, Anne Imberty, Francis M Martin, Frédérique Lisacek

Open access · goldAbstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. O-Glycosylated expansinScience advances · 2026
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  7. Article
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  11. A lectin gene is involved in the defense ofFrontiers in microbiology · 2023
    Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Annie LebretonBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China.ORCID 0000-0002-8301-9983
François BonnardelUniversity of Grenoble-Alpes, CNRS, CERMAV, 38000 Grenoble, France.ORCID 0000-0003-4266-3956
Yu-Cheng DaiBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China.
Anne ImbertyUniversity of Grenoble-Alpes, CNRS, CERMAV, 38000 Grenoble, France.ORCID 0000-0001-6825-9527
Francis M MartinBeijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China.
Frédérique LisacekSwiss Institute of Bioinformatics, CH-1227 Geneva, Switzerland.ORCID 0000-0002-0948-4537
Beijing Forestry University · CNSIB Swiss Institute of Bioinformatics · CHCentre National de la Recherche Scientifique · FR

Funding

Agence Nationale de la Recherche ANR-11-LABX-0002-01Agence Nationale de la Recherche ANR-15-IDEX-02Alliance Campus Rhodanien no numberEuropean Regional Development Fund no numberRegion Lorraine no nmber
6 · The paper itself

Abstract

Fungal lectins are a large family of carbohydrate-binding proteins with no enzymatic activity. They play fundamental biological roles in the interactions of fungi with their environment and are found in many different species across the fungal kingdom. In particular, their contribution to defense against feeders has been emphasized, and when secreted, lectins may be involved in the recognition of bacteria, fungal competitors and specific host plants. Carbohydrate specificities and quaternary structures vary widely, but evidence for an evolutionary relationship within the different classes of fungal lectins is supported by a high degree of amino acid sequence identity. The UniLectin3D database contains 194 fungal lectin 3D structures, of which 129 are characterized with a carbohydrate ligand. Using the UniLectin3D lectin classification system, 109 lectin sequence motifs were defined to screen 1223 species deposited in the genomic portal MycoCosm of the Joint Genome Institute. The resulting 33,485 putative lectin sequences are organized in MycoLec, a publicly available and searchable database. These results shed light on the evolution of the lectin gene families in fungi.

Indexed as

carbohydrate recognitionlectinsMycoCosm

Identifiers

PMID34200153
PMCPMC8227253
OpenAlexW3168310949

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.