Evidence map›Paper›PMID 34197460›Full record

ArticlePloS one2021

Isolation and characterization of a novel bacteriophage WO from Allonemobius socius crickets in Missouri.

Jonah Kupritz, John Martin, Kerstin Fischer, Kurt C Curtis, Joseph R Fauver, Yuefang Huang, Young-Jun Choi, Wandy L Beatty, Makedonka Mitreva, Peter U Fischer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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  8. Microbial genomics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jonah KupritzInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.ORCID 0000-0002-7276-7898
John MartinInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Kerstin FischerInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Kurt C CurtisInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Joseph R FauverInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Yuefang HuangInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Young-Jun ChoiInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Wandy L BeattyDepartment of Molecular Microbiology, Washington University in St. Louis, St. Louis, Missouri, United States of America.
Makedonka MitrevaInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Peter U FischerInfectious Disease Division, Washington University School of Medicine, St. Louis, Missouri, United States of America.ORCID 0000-0003-4558-3417
Washington University in St. Louis · USJames S. McDonnell Foundation · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wolbachia are endosymbionts of numerous arthropod and some nematode species, are important for their development and if present can cause distinct phenotypes of their hosts. Prophage DNA has been frequently detected in Wolbachia, but particles of Wolbachia bacteriophages (phage WO) have been only occasionally isolated. Here, we report the characterization and isolation of a phage WO of the southern ground cricket, Allonemobius socius, and provided the first whole-genome sequence of phage WO from this arthropod family outside of Asia. We screened A. socius abdomen DNA extracts from a cricket population in eastern Missouri by quantitative PCR for Wolbachia surface protein and phage WO capsid protein and found a prevalence of 55% and 50%, respectively, with many crickets positive for both. Immunohistochemistry using antibodies against Wolbachia surface protein showed many Wolbachia clusters in the reproductive system of female crickets. Whole-genome sequencing using Oxford Nanopore MinION and Illumina technology allowed for the assembly of a high-quality, 55 kb phage genome containing 63 open reading frames (ORF) encoding for phage WO structural proteins and host lysis and transcriptional manipulation. Taxonomically important regions of the assembled phage genome were validated by Sanger sequencing of PCR amplicons. Analysis of the nucleotides sequences of the ORFs encoding the large terminase subunit (ORF2) and minor capsid (ORF7) frequently used for phage WO phylogenetics showed highest homology to phage WOAu of Drosophila simulans (94.46% identity) and WOCin2USA1 of the cherry fruit fly, Rhagoletis cingulata (99.33% identity), respectively. Transmission electron microscopy examination of cricket ovaries showed a high density of phage particles within Wolbachia cells. Isolation of phage WO revealed particles characterized by 40-62 nm diameter heads and up to 190 nm long tails. This study provides the first detailed description and genomic characterization of phage WO from North America that is easily accessible in a widely distributed cricket species.

Indexed as

Genome, ViralAnimalsBacteriophagesCapsid ProteinsDNA, BacterialDNA, ViralFemaleGryllidaeMembrane ProteinsMissouriOpen Reading FramesPhylogenyWhole Genome SequencingWolbachiaCapsid ProteinsDNA, BacterialDNA, ViralMembrane Proteins

Identifiers

PMID34197460
PMCPMC8248633
OpenAlexW3175283263

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.