Evidence map›Paper›PMID 34197205›Full record

ArticleMicrobiology resource announcements2021

StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs.

Alyssa A Pratt, Ellis L Torrance, George W Kasun, Kenneth M Stedman, Ignacio de la Higuera

Open access · diamondAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alyssa A PrattDepartment of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
Ellis L TorranceDepartment of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
George W KasunDepartment of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
Kenneth M StedmanDepartment of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
Ignacio de la HigueraDepartment of Biology, Center for Life in Extreme Environments, Portland State University, Portland, Oregon, USA.
Portland State University · US

Funding

Apprenticeships in Science and Engineering ProgramNASA 80NSSC17K0301National Science Foundation (NSF) MCB-2025305Shared Services Center NASA 80NSSC17K0301
6 · The paper itself

Abstract

Nucleic acid secondary structures play important roles in regulating biological processes. StemLoop-Finder is a computational tool to recognize and annotate conserved structural motifs in large data sets. The program is optimized for the detection of stem-loop structures that may serve as origins of replication in circular replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA viruses.

Identifiers

PMID34197205
PMCPMC8248882
OpenAlexW3176977910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.