Evidence map›Paper›PMID 34197039›Full record

ArticleThe plant genome2021

Genetic control of kernel compositional variation in a maize diversity panel.

Jonathan S Renk, Amanda M Gilbert, Travis J Hattery, Christine H O'Connor, Patrick J Monnahan, Nickolas Anderson, Amanda J Waters, David P Eickholt, Sherry A Flint-Garcia, Marna D Yandeau-Nelson and 1 more

Abstract read
In one paragraph

Article in The plant genome, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
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  9. Importance of genetic architecture in marker selection decisions for genomic prediction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Predicting moisture content during maize nixtamalization using machine learning with NIR spectroscopy.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jonathan S RenkDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA.
Amanda M GilbertDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA.
Travis J HatteryDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Christine H O'ConnorDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA.
Patrick J MonnahanDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA.
Nickolas AndersonPepsiCo R&D, St Paul, MN, 55108, USA.
Amanda J WatersPepsiCo R&D, St Paul, MN, 55108, USA.
David P EickholtPepsiCo R&D, St Paul, MN, 55108, USA.
Sherry A Flint-GarciaUnited States Department of Agriculture, Agricultural Research Service, Columbia, MO, 65211, USA.ORCID 0000-0003-4156-5318
Marna D Yandeau-NelsonDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA, 50011, USA.
Candice N HirschDepartment of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA.ORCID 0000-0002-8833-3023

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maize (Zea mays L.) is a multi-purpose row crop grown worldwide, which, over time, has often been bred for increased yield at the detriment of lower composition grain quality. Some knowledge of the genetic factors that affect quality traits has been discovered through the study of classical maize mutants; however, much of the underlying genetic control of these traits and the interaction between these traits remains unknown. To better understand variation that exists for grain compositional traits in maize, we evaluated 501 diverse temperate maize inbred lines in five unique environments and predicted 16 compositional traits (e.g., carbohydrates, protein, and starch) based on the output of near-infrared (NIR) spectroscopy. Phenotypic analysis found substantial variation for compositional traits and the majority of variation was explained by genetic and environmental factors. Correlations and trade-offs among traits in different maize types (e.g., dent, sweetcorn, and popcorn) were explored, and significant differences and meaningful correlations were detected. In total, 22.9-71.0% of the phenotypic variation across these traits could be explained using 2,386,666 single nucleotide polymorphism (SNP) markers generated from whole-genome resequencing data. A genome-wide association study (GWAS) was conducted using these same markers and found 72 statistically significant SNPs for 11 compositional traits. This study provides valuable insights in the phenotypic variation and genetic control underlying compositional traits that can be used in breeding programs for improving maize grain quality.

Indexed as

SeedsZea maysGenetic Association StudiesPhenotypePlant BreedingStarchStarch

Identifiers

PMID34197039
PMCPMC12807035

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.