Evidence map›Paper›PMID 34196828›Full record

ArticleExtremophiles : life under extreme conditions2021

Glutamate optimizes enzymatic activity under high hydrostatic pressure in Desulfovibrio species: effects on the ubiquitous thioredoxin system.

H Gaussier, M Nouailler, E Champaud, E B Garcin, C Sebban-Kreuzer, O Bornet, M Garel, C Tamburini, L Pieulle, A Dolla and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Extremophiles : life under extreme conditions, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

H Gaussier *Université de Toulon, CNRS, IRD, MIO, Aix Marseille Univ, Marseille, France.
M Nouailler *CNRS, LISM, Aix Marseille Univ, Marseille, France.
E ChampaudUniversité de Toulon, CNRS, IRD, MIO, Aix Marseille Univ, Marseille, France.
E B GarcinCNRS, LISM, Aix Marseille Univ, Marseille, France.
C Sebban-KreuzerCNRS, LISM, Aix Marseille Univ, Marseille, France.
O BornetCNRS, IMM, Aix Marseille Univ, Marseille, France.
M GarelUniversité de Toulon, CNRS, IRD, MIO, Aix Marseille Univ, Marseille, France.
C TamburiniUniversité de Toulon, CNRS, IRD, MIO, Aix Marseille Univ, Marseille, France.
L PieulleCNRS, LCB, Aix Marseille Univ, Marseille, France.
A DollaUniversité de Toulon, CNRS, IRD, MIO, Aix Marseille Univ, Marseille, France. alain.dolla@mio.osupytheas.fr.ORCID http://orcid.org/0000-0003-2930-1336
N PradelUniversité de Toulon, CNRS, IRD, MIO, Aix Marseille Univ, Marseille, France. nathalie.pradel@ird.fr.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In piezophilic microorganisms, enzymes are optimized to perform under high hydrostatic pressure. The two major reported mechanisms responsible for such adaptation in bacterial species are changes in amino acids in the protein structure, favoring their activity and stability under high-pressure conditions, and the possible accumulation of micromolecular co-solutes in the cytoplasm. Recently, the accumulation of glutamate in the cytoplasm of piezophilic Desulfovibrio species has been reported under high-pressure growth conditions. In this study, analysis of the effect of glutamate on the enzymatic activity of the thioredoxin reductase/thioredoxin enzymatic complex of either a piezosensitive or a piezophilic microorganism confirms its role as a protective co-solute. Analysis of the thioredoxin structures suggests an adaptation both to the presence of glutamate and to high hydrostatic pressure in the enzyme from the piezophilic strain. Indeed, the presence of large surface pockets could counterbalance the overall compression that occurs at high hydrostatic pressure to maintain enzymatic activity. A lower isoelectric point and a greater dipolar moment than that of thioredoxin from the piezosensitive strain would allow the protein from the piezophilic strain to compensate for the presence of the charged amino acid glutamate to interact with its partner.

Indexed as

DesulfovibrioGlutamic AcidAdaptation, PhysiologicalHydrostatic PressureThioredoxinsGlutamic AcidThioredoxinsCo-soluteGlutamateHydrostatic pressureThioredoxin

Identifiers

PMID34196828
OpenAlexW3177355119

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.