Evidence map›Paper›PMID 34195962›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Computational Analysis of Transposable Elements and CircRNAs in Plants.

Liliane Santana Oliveira, Andressa Caroline Patera, Douglas Silva Domingues, Danilo Sipoli Sanches, Fabricio Martins Lopes, Pedro Henrique Bugatti, Priscila Tiemi Maeda Saito, Vinicius Maracaja-Coutinho, Alan Mitchell Durham, Alexandre Rossi Paschoal

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Liliane Santana OliveiraDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil. liliane.sntn@gmail.com.
Andressa Caroline PateraDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil.
Douglas Silva DominguesDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil.
Danilo Sipoli SanchesDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil.
Fabricio Martins LopesDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil.
Pedro Henrique BugattiDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil.
Priscila Tiemi Maeda SaitoDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil.
Vinicius Maracaja-CoutinhoCentro de Modelamiento Molecular, Biofísica y Bioinformática-CM2B2, Facultad de Ciencias Quimicas y Farmaceuticas, Universidad de Chile, Santiago, Chile.
Alan Mitchell DurhamDepartment of Computer Science, Instituto de Matemática e Estatística, Universidade de São Paulo (USP), Cidade Universitária, SP, Brazil.
Alexandre Rossi PaschoalDepartment of Computer Science, Federal University of Technology-Paraná (UTFPR), Cornélio Procópio, PR, Brazil. paschoal@utfpr.edu.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This chapter provides two main contributions: (1) a description of computational tools and databases used to identify and analyze transposable elements (TEs) and circRNAs in plants; and (2) data analysis on public TE and circRNA data. Our goal is to highlight the primary information available in the literature on circular noncoding RNAs and transposable elements in plants. The exploratory analysis performed on publicly available circRNA and TEs data help discuss four sequence features. Finally, we investigate the association on circRNAs:TE in plants in the model organism Arabidopsis thaliana.

Indexed as

ArabidopsisDNA Transposable ElementsComputational BiologyPlantsRNA, CircularDNA Transposable ElementsRNA, CircularBioinformaticsCircRNAsCircular RNAComputational methodsData analysisDatabasesInteractionMobile elementsNoncodingTransposable elements

Identifiers

PMID34195962

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.