Evidence map›Paper›PMID 34195923›Full record

ArticleArchives of virology2021

Prevalence of transmitted HIV-1 drug resistance among treatment-naive individuals in China, 2000-2016.

Huangbo Yuan, Zhenqiu Liu, Xuefu Wu, Mingshan Wu, Qiwen Fang, Xin Zhang, Tingting Shi, Damien C Tully, Tiejun Zhang

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. [Genetic Subtypes and Status of Transmitted Drug Resistance of HIV/AIDS Patients in Sichuan].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2022
    Article
  9. Medicinal Fungi with Antiviral Effect.Molecules (Basel, Switzerland) · 2022
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Huangbo YuanDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, 200237, China.
Zhenqiu LiuState Key Laboratory of Genetic Engineering, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Xuefu WuDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, 200237, China.
Mingshan WuDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, 200237, China.
Qiwen FangDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, 200237, China.
Xin ZhangDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, 200237, China.
Tingting ShiDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, 200237, China.
Damien C TullyDepartment of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, UK.
Tiejun ZhangDepartment of Epidemiology, School of Public Health, Fudan University, Shanghai, 200237, China. tjzhang@shmu.edu.cn.ORCID http://orcid.org/0000-0002-9591-0650

Funding

Key Research and Development Program of Jiangxi Province (CN) No. 2017YFC0211704Natural Science Foundation of China 81772170
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) with transmitted drug-resistance (TDR) limits the therapeutic options available for treatment-naive HIV patients. This study aimed to further our understanding of the prevalence and transmission characteristics of HIV with TDR for the application of first-line antiretroviral regimens. A total of 6578 HIV-1 protease/reverse-transcriptase sequences from treatment-naive individuals in China between 2000 and 2016 were obtained from the Los Alamos HIV Sequence Database and were analyzed for TDR. Transmission networks were constructed to determine genetic relationships. The spreading routes of large TDR clusters were identified using a Bayesian phylogeographic framework. TDR mutations were detected in 274 (4.51%) individuals, with 1.40% associated with resistance to nucleoside reverse transcriptase inhibitors, 1.52% to non-nucleoside reverse transcriptase inhibitors, and 1.87% to protease inhibitors. The most frequent mutation was M46L (58, 0.89%), followed by K103N (36, 0.55%), M46I (36, 0.55%), and M184V (26, 0.40%). The prevalence of total TDR initially decreased between 2000 and 2010 (OR = 0.83, 95% CI 0.73-0.95) and then increased thereafter (OR = 1.50, 95% CI 1.13-1.97). The proportion of sequences in a cluster (clustering rate) among HIV isolates with TDR sequences was lower than that of sequences without TDR (40.5% vs. 48.8%, P = 0.023) and increased from 27.3% in 2005-2006 to 63.6% in 2015-2016 (P < 0.001). While most TDR mutations were associated with reduced relative transmission fitness, mutation M46I was associated with higher relative transmission fitness than the wild-type strain. This study identified a low-level prevalence of TDR HIV in China during the last two decades. However, the increasing TDR HIV rate since 2010, the persistent circulation of drug resistance mutations, and the expansion of self-sustaining drug resistance reservoirs may compromise the efficacy of antiretroviral therapy programs.

Indexed as

PrevalenceAnti-HIV AgentsAnti-Retroviral AgentsChinaDrug Resistance, ViralFemaleHIV-1HIV InfectionsHumansMaleMutationPhylogenyAnti-HIV AgentsAnti-Retroviral Agents

Identifiers

PMID34195923

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.